Transcript Information: R_Transcript_17353.p1


Annotated TAIR IDAT5G46860.1
Annotated Gene NameSyntaxin/t-SNARE family protein
Annotated Gene Symbol(s)VAM3, ATVAM3, SYP22, ATSYP22, SGR3
Annotation TypeOrtholog
Chromosome Positionchr5:19012342-19013795 | Reverse length=268
E-Value5.8E-140
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 157.774121251956
Replicate 233.321562312591
Replicate 341.421327865609
Condition 2: 8 Hour
Replicate 137.198290406582
Replicate 238.785246379401
Replicate 351.991781452495
Condition 3: 24 Hour
Replicate 149.166277425703
Replicate 240.271991897544
Replicate 348.359559912938


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_17353.p1 GENE.R_Transcript_17353~~R_Transcript_17353.p1 ORF type:5prime_partial len:339 (+),score=69.76,Syntaxin_2|PF14523.2|3e-34,Syntaxin_2|PF14523.2|1.9e+02,SNARE|PF05739.15|1e+04,SNARE|PF05739.15|1.5e-16,Syntaxin|PF00804.21|2.3e-05 R_Transcript_17353:3-1019(+)
AAAACCAAAACCTTTGAAGTTTCAGTCAAACAAACACGGAGCCCATTCCCATTCCTATTCCTGTTCCCATTTCCTTCTACCTTTCTCTCTCATATTAACCCCTCATCATCAGTTTTGATCTTTTCTTCTTCCCAGATCCCGAGACAAAGGGGTTGGTTGAAAGGAGGAGGGGCAAAAGAGAAGAAGAAGATGAGCTTCCAAGATCTGGAAGCAGGAGGGAGAAGGCCATTGGCATCAAGGAGGGACTTGATCAATGCAAAGCAAGACCCAACTCAGGCTGTAGCTTCTGGTATTTTCCAGATCAACACTGCTGTCTCTACTTTTCAGCGCCTCGTTAATACCCTTGGTACCCCTAAGGATACTCCTGACCTTCGTCAGAAGCTCCACAAGACCAGGTTGCACATTGGGCAATTAGTGAAGGACACATCGGCTAAACTCAAGCAAGCAAGTGACTCTGATCATGGTACTAATGTCAGTGCCAGCAAGAAGATTGCTGATGCTAAGCTTGCCAAAGATTTCCAACAAGTTTTAAAAGATTTCCAAAAGGCTCAACGTCTAGCAGCTGAGAGGGAAACTGCATATACCCCTTTTGTTCCCCAGGCTGTTCTTCCTTCAAGCTACACGGCTAGTGAGATAGACGTAAATTCAGACAAGACGCAGGAGCAGCGTGCTCTTCTTGTGGAATCTAGAAGGCAAGACGTGTTACTGTTGGACAATGAGATATCCTTTAATGAAGCTGTAATCGAGGAAAGAGACCAGGGAATACAGGAAATCCAGAATCAAATTGGCGAGGTGAATGAGATCTTCAAGGATCTTGCCGTTCTTGTCCACGATCAAGGAACTATGATTGATGATATAGGCTCCCATATCGAGAATGCCAATGCTGCAACTGCCCAGGGAAGATCGCAACTTGCCAAGGCCGCAAAGAGCCAAAGATCAAATTCATCTCTGACCTGCTTGCTTCTGGTGATATTCGGAATCATACTTCTGATTGTTCTAATCATCATCGTCGCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_17353.p1 GENE.R_Transcript_17353~~R_Transcript_17353.p1 ORF type:5prime_partial len:339 (+),score=69.76,Syntaxin_2|PF14523.2|3e-34,Syntaxin_2|PF14523.2|1.9e+02,SNARE|PF05739.15|1e+04,SNARE|PF05739.15|1.5e-16,Syntaxin|PF00804.21|2.3e-05 R_Transcript_17353:3-1019(+)
KTKTFEVSVKQTRSPFPFLFLFPFPSTFLSHINPSSSVLIFSSSQIPRQRGWLKGGGAKEKKKMSFQDLEAGGRRPLASRRDLINAKQDPTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPDLRQKLHKTRLHIGQLVKDTSAKLKQASDSDHGTNVSASKKIADAKLAKDFQQVLKDFQKAQRLAAERETAYTPFVPQAVLPSSYTASEIDVNSDKTQEQRALLVESRRQDVLLLDNEISFNEAVIEERDQGIQEIQNQIGEVNEIFKDLAVLVHDQGTMIDDIGSHIENANAATAQGRSQLAKAAKSQRSNSSLTCLLLVIFGIILLIVLIIIVA*

Click here to download the sequence:
Link to NCBI Protein BLAST