Transcript Information: R_Transcript_173910.p1


Annotated TAIR IDAT1G20230.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:7009570-7011852 | Forward length=760
E-Value7.9e-317
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0386067371329
Replicate 20.33045024868266
Replicate 30.6378389403287
Condition 2: 8 Hour
Replicate 10.85967322454009
Replicate 20.75799599461646
Replicate 31.0328398294893
Condition 3: 24 Hour
Replicate 11.3341098631111
Replicate 21.0680512779941
Replicate 32.0138808186492


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_173910.p1 GENE.R_Transcript_173910~~R_Transcript_173910.p1 ORF type:5prime_partial len:826 (+),score=146.73,PPR_2|PF13041.2|0.015,PPR_2|PF13041.2|7.5e+02,PPR_2|PF13041.2|2.1e-11,PPR_2|PF13041.2|1.6e-10,PPR_2|PF13041.2|1.4e+03,PPR_2|PF13041.2|1.6e-07,PPR_2|PF13041.2|2e-10,PPR_2|PF13041.2|15,PPR_2|PF13041.2|3.7e-14,PPR_2|PF13041.2|8.9e-06,PPR_2|PF13041.2|3.9,PPR_2|PF13041.2|8.9e+02,PPR_2|PF13041.2|1.5e+03,PPR|PF01535.16|9.3e+03,PPR|PF01535.16|0.014,PPR|PF01535.16|21,PPR|PF01535.16|1.2e-07,PPR|PF01535.16|1.8e-05,PPR|PF01535.16|35,PPR|PF01535.16|2e-05,PPR|PF01535.16|4.3e-06,PPR|PF01535.16|0.18,PPR|PF01535.16|1.4e-05,PPR|PF01535.16|0.0013,PPR|PF01535.16|1.6,PPR|PF01535.16|4.8,PPR|PF01535.16|9e+03,PPR_1|PF12854.3|2.6e+02,PPR_1|PF12854.3|96,PPR_1|PF12854.3|9.1e-09,PPR_1|PF12854.3|7e-06,PPR_1|PF12854.3|0.00068,PPR_1|PF12854.3|0.14,PPR_1|PF12854.3|6.4e+02,PPR_1|PF12854.3|49,PPR_1|PF12854.3|6.9e-05,PPR_1|PF12854.3|0.00076,PPR_1|PF12854.3|28,DYW_deaminase|PF14432.2|5.2e-44,PPR_3|PF13812.2|0.23,PPR_3|PF13812.2|2.6e+02,PPR_3|PF13812.2|3.2e-05,PPR_3|PF13812.2|2.6,PPR_3|PF13812.2|0.00065,PPR_3|PF13812.2|0.015,PPR_3|PF13812.2|99,PPR_3|PF13812.2|0.019,PPR_3|PF13812.2|2.4,PPR_3|PF13812.2|52,PPR_3|PF13812.2|1.9e+02,PPR_3|PF13812.2|6.9e+02 R_Transcript_173910:2-2479(+)
CAAGACCAAGCTACAATGTCACTCACTCCCTTGCATTTGCAGTCTTGTACCATTAAATTGTTCAAATTTCTTCTTTCCCGCGTTCATTTTCACGTTCGTATGTCCCAGATTACTGATAAACTAACTGATAATATATTAGCAAACTTTATAAATGGAGTACTACTCATACTATACATACATGATCTGCAAATAGTAATGCCATATATGATGGCAAACAAAGCCATTTTCAGAATAAGCAGAACAACCTTATCAATCCCTACCATTCTCAACTCAGCAACAACATCTTCTACTCACACTCGTCAAGCACATGCTTACATCCTCAAAACTGGTCTTCTCATTGACATTTCTTCTTCCTCAAAGCTACTATCTTTATACGCCAATCATCAATGTTTCAATGAAGCAACCCTTTTTCTTGACTCAATTGACCAACCCACTTCATCGTTTTTCTCAATCATCATCAATGCACTGTCAAAATCCAATCTTTCTAACAGTGTCCTTACAATGTTCTCTAAAATGGTGTCAAAGGGTGTTTTCCCGGATGGGTATCTCTTGCCTGCTGCTGCCAAGGCTTGTGCCGGGCTTTCGGCTCTTGAACTTGGCAGGCAGGTTCATGGCATTGTTGAGACATCTGGGTATTCATTGGATAACGTTGTTCAATCATCTTTGGCTCATATGTATGTCAAATGTGGTCGGTTGAGTGTTGCACACAAGGTGCTCGACAAAATTCCTGCACCAGATGTTGTTACCTTTAGTGCTTTGATTGCGGGTTATGCTAGAAATGGAGAGGTGGGTATGGCTAAAAAGTTGTTCAATGACATGGAGGAATTGGGGTTGGAGCCAAATTTGGTTTCTTGGAATGGTTTGATAGCTGGGTTTAATCAAAGTGGAAGGTACTTGGAGGCTATCAATGTCTTTCGAGATATGCATTCGTGGGGTTTTCAGCCTGATGGGAGTAGTTTCTCTAGTGTTTTAGCTGCGATAGCGGATTTGGAGGTGTTAAATGTGGGAGTCCAGGTTCATAGTTGTGTGATCAAGAGGGGGCTGGCTTCTGACAAGTGGGTTGTGAGTTCTTTCATTGATATGTATGGGAAGTGTGCATGCATATCGGAGATGAAACAAGCTTTTGATGATATGGGTTGTATGGAAATAGGTTCATGTAATGCCTTAGTCACTGGGCTTGCAAGGAATGGTCTGATTGATGATGCATTGTTAGTGTTTAGTCGGATGAGAGAGCAAGGGATGGGCATGAATGTTGTTTCTTGGACATCGATGATTGCTTGTTGCTCACAAAATGGGAAAGATGTTGAGGCTTTGAAGCTTTTTACGGATATGCAGTTTGCAGGTGTGGAGCCTAATGCTGTAACCATCCCTTGCTTGCTGCCAGCATGTGGCAATATTGCAGCATTGATGCATGGGAAGGCTGCACATTGTTTCTCTATGCGAAGGGGAATAGTGCACGATGTCTTTGTTGGAAGTGCTCTCATTGACATGTATGCAAAATGTGGCAAAATCAGGGATTCCAAGCTGTGTTTCGACACAATGCCTACCAGAAACTTGGTAACATGGAATGTGATAATTGGAGGATACGCAATGCATGGGAATGATAAGGAGGCCATGGAGATGTTTGATTGGATGCAGAGGAGTGGGCGAAAGCCAAATGCGGTCACATTTACTTGTCTTCTATCTGCTTGTAATCAGAAAGGCCTCGTTGATGAGGGCTGGCGCTATTTTAATAGCATGGCAGAAGAGCATGGTGTTCCACCTCAAATGGAGCATTATGCTTGCATGGTGAGCCTCATAAGCCGTTTAGGAAAGCTTGAAGAAGCTTACTCCTTGATCAACACAATGCCCTTTGAGCCGGATTCTTGTGTTTGGGGGGCATTGCTCAGTTCTTGCAGAGTGTACAAAAATTTGCAGCTAGGCGAGACTGCAGCAGACAGACTCTTTAAGTTGGAACCTAGAAATCCTGGTAACTATGTCCTCCTTTCCAATATCTATGCTTCGAAGGGCATGTGGGATGATGTAGATAGAGTAAGGGATCTGATGAAGGGGATCGGATTGAAGAAAAACCCAGGTTGCAGTTGGATTGAGATCAAGAACAAAGTCCACATGCTTCTAGCAGGGGACAAAGCTCACCCCCAGATGGCCCAAATTATACAGAAATTGGAAGATTTGGGTACGGAGATGAAGAAATCAGGTTTAGTTCCTAAACTCGATTATGTGCTACAGGATGTGGAGGAGCAGGACAAGGAACAGATCTTGTGTGGACATAGCGAGAAGTTGGCTGTCGTGTTTGGACTGCTAAATACTCCTGCAGGTTCTCCTCTTCGTGTTATTAAGAACCTTCGTATCTGTGGTGACTGCCATGCTGTTATAAAGTTTATATCTAATTTTGAAGGGCGAGAAATTTTTGTCAGAGACACCAATCGCTTCCACCATTTCAAGGATGGGGAATGTTCTTGTGGAGATTATTGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_173910.p1 GENE.R_Transcript_173910~~R_Transcript_173910.p1 ORF type:5prime_partial len:826 (+),score=146.73,PPR_2|PF13041.2|0.015,PPR_2|PF13041.2|7.5e+02,PPR_2|PF13041.2|2.1e-11,PPR_2|PF13041.2|1.6e-10,PPR_2|PF13041.2|1.4e+03,PPR_2|PF13041.2|1.6e-07,PPR_2|PF13041.2|2e-10,PPR_2|PF13041.2|15,PPR_2|PF13041.2|3.7e-14,PPR_2|PF13041.2|8.9e-06,PPR_2|PF13041.2|3.9,PPR_2|PF13041.2|8.9e+02,PPR_2|PF13041.2|1.5e+03,PPR|PF01535.16|9.3e+03,PPR|PF01535.16|0.014,PPR|PF01535.16|21,PPR|PF01535.16|1.2e-07,PPR|PF01535.16|1.8e-05,PPR|PF01535.16|35,PPR|PF01535.16|2e-05,PPR|PF01535.16|4.3e-06,PPR|PF01535.16|0.18,PPR|PF01535.16|1.4e-05,PPR|PF01535.16|0.0013,PPR|PF01535.16|1.6,PPR|PF01535.16|4.8,PPR|PF01535.16|9e+03,PPR_1|PF12854.3|2.6e+02,PPR_1|PF12854.3|96,PPR_1|PF12854.3|9.1e-09,PPR_1|PF12854.3|7e-06,PPR_1|PF12854.3|0.00068,PPR_1|PF12854.3|0.14,PPR_1|PF12854.3|6.4e+02,PPR_1|PF12854.3|49,PPR_1|PF12854.3|6.9e-05,PPR_1|PF12854.3|0.00076,PPR_1|PF12854.3|28,DYW_deaminase|PF14432.2|5.2e-44,PPR_3|PF13812.2|0.23,PPR_3|PF13812.2|2.6e+02,PPR_3|PF13812.2|3.2e-05,PPR_3|PF13812.2|2.6,PPR_3|PF13812.2|0.00065,PPR_3|PF13812.2|0.015,PPR_3|PF13812.2|99,PPR_3|PF13812.2|0.019,PPR_3|PF13812.2|2.4,PPR_3|PF13812.2|52,PPR_3|PF13812.2|1.9e+02,PPR_3|PF13812.2|6.9e+02 R_Transcript_173910:2-2479(+)
QDQATMSLTPLHLQSCTIKLFKFLLSRVHFHVRMSQITDKLTDNILANFINGVLLILYIHDLQIVMPYMMANKAIFRISRTTLSIPTILNSATTSSTHTRQAHAYILKTGLLIDISSSSKLLSLYANHQCFNEATLFLDSIDQPTSSFFSIIINALSKSNLSNSVLTMFSKMVSKGVFPDGYLLPAAAKACAGLSALELGRQVHGIVETSGYSLDNVVQSSLAHMYVKCGRLSVAHKVLDKIPAPDVVTFSALIAGYARNGEVGMAKKLFNDMEELGLEPNLVSWNGLIAGFNQSGRYLEAINVFRDMHSWGFQPDGSSFSSVLAAIADLEVLNVGVQVHSCVIKRGLASDKWVVSSFIDMYGKCACISEMKQAFDDMGCMEIGSCNALVTGLARNGLIDDALLVFSRMREQGMGMNVVSWTSMIACCSQNGKDVEALKLFTDMQFAGVEPNAVTIPCLLPACGNIAALMHGKAAHCFSMRRGIVHDVFVGSALIDMYAKCGKIRDSKLCFDTMPTRNLVTWNVIIGGYAMHGNDKEAMEMFDWMQRSGRKPNAVTFTCLLSACNQKGLVDEGWRYFNSMAEEHGVPPQMEHYACMVSLISRLGKLEEAYSLINTMPFEPDSCVWGALLSSCRVYKNLQLGETAADRLFKLEPRNPGNYVLLSNIYASKGMWDDVDRVRDLMKGIGLKKNPGCSWIEIKNKVHMLLAGDKAHPQMAQIIQKLEDLGTEMKKSGLVPKLDYVLQDVEEQDKEQILCGHSEKLAVVFGLLNTPAGSPLRVIKNLRICGDCHAVIKFISNFEGREIFVRDTNRFHHFKDGECSCGDYW*

Click here to download the sequence:
Link to NCBI Protein BLAST