Transcript Information: R_Transcript_174290.p2


Annotated TAIR IDAT4G38440.1
Annotated Gene NameLOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II-associated protein 1, C-terminal (InterPro:IPR013929), RNA polymerase II-associated protein 1, N-terminal (InterPro:IPR013930); Has 276 Blast hits to 220 proteins in 102 species: Archae - 0; Bacteria - 2; Metazoa - 151; Fungi - 65; Plants - 41; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:17989115-17994549 | Forward length=1465
E-Value4E-11
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.24995595733688
Replicate 30
Condition 2: 8 Hour
Replicate 10.58299678445822
Replicate 20.53240194859966
Replicate 30.86436241049462
Condition 3: 24 Hour
Replicate 11.3665361445062
Replicate 20.26256260584021
Replicate 30.26056791293925


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_174290.p2 GENE.R_Transcript_174290~~R_Transcript_174290.p2 ORF type:internal len:84 (+),score=12.41 R_Transcript_174290:2-250(+)
GCAGCTATGACCAATGAAGATAGCAAGTCTTTAAATGCCGAGTGGGCCCACCAGCGATTACCTCTTCCCAGCCACTGGTTGCTTAGCCCTATCACCACCATAATTGACAGCACACCTAGTGATGTACCAAACAGTTCAACCGGAGTACCTTTAGTGCAAGAGCCAACGGAATTTATTGAACTTGCTAAAGCTGGTCTCTTCCTCCTGTTGGGTATTGAAGCGATGTCCTCCAAACTTTCAAAAGAAGAC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_174290.p2 GENE.R_Transcript_174290~~R_Transcript_174290.p2 ORF type:internal len:84 (+),score=12.41 R_Transcript_174290:2-250(+)
AAMTNEDSKSLNAEWAHQRLPLPSHWLLSPITTIIDSTPSDVPNSSTGVPLVQEPTEFIELAKAGLFLLLGIEAMSSKLSKED

Click here to download the sequence:
Link to NCBI Protein BLAST