Transcript Information: R_Transcript_174332.p1


Annotated TAIR IDAT3G57080.1
Annotated Gene NameEukaryotic rpb5 RNA polymerase subunit family protein
Annotated Gene Symbol(s)RPB5B, NRPE5
Annotation TypeOrtholog
Chromosome Positionchr3:21125878-21127470 | Forward length=222
E-Value4E-93
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 126.010469360474
Replicate 227.745111264394
Replicate 328.060753555287
Condition 2: 8 Hour
Replicate 123.961167841233
Replicate 227.471940547742
Replicate 326.255008218774
Condition 3: 24 Hour
Replicate 133.534796986182
Replicate 232.767813208858
Replicate 333.222408899755


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_174332.p1 GENE.R_Transcript_174332~~R_Transcript_174332.p1 ORF type:5prime_partial len:280 (+),score=33.98,RNA_pol_Rpb5_C|PF01191.15|1.3e-27,RNA_pol_Rpb5_N|PF03871.10|2.4e-21 R_Transcript_174332:1-840(+)
GATCTCACAGTAGATACACCAAAAATTACTCGATTGATTTTGTACTGCGTTTTTTCTTTCCCCCCAGAGTCTTCAAATTCCCAGGTACACATTACAGTCACTCAAGTCGTCAGACTCAGAGAGAGAGAAAGAATCCAAACAAACACAATCAATCAACATTCAAGAGAGATGGAGATGGAGGGAGAAGTGAACGGAGAACTAGGAAGATGCCTAAGCAGCTTTGTCGACGACGGCACTGTCGAAAGCCACCGTTACTTTCTGGCTCGAAGAACAGTTCTTGAGATGCTAAAGGACAGAGGTTTTGCGGTCCCTATTTCCGAGATTGAACTTTCTCTTCACGAGTTTCGTGACATTTACGGGCCTAAACCCGACCCGGATCGCCTTCGGGTCTCTACTGCCCTCCGTTCTGACCCTTCCAAAAAGATATTGGTGATATTCTGTGGGCCTCAGCTGGTGAAAGTGTCAGTAATGCGTGGCATTGCAGCTCAGATTGTTAATAAAGAGAGTTTGAGTGGGTTGATAATTATCCTGCAAAATAAGATTACTAACCAAGCTCAGAAAGCTGTGGATGTTTTGCCTTTCAAAGTTGAAATCTTTCAGATTACTGATTTGCTCGTGAATGTTACTAAGCATGTTCTGAAACCAAAGCATATTGTGCTGACCGACAGGGAGAAACAGAAGCTGTTACAGAAATACAATTTGGAAGAAAAACAGCTCCCTCGTATGTCAGTGAAGGATGCAATTTCGAGATATTATGGACTTGAGAAGGGCCAGGTGGTGAAAGTTATGTATAGTGGGGAGATTACCCAGTCACATATCACTTACCGTTGTGTATGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_174332.p1 GENE.R_Transcript_174332~~R_Transcript_174332.p1 ORF type:5prime_partial len:280 (+),score=33.98,RNA_pol_Rpb5_C|PF01191.15|1.3e-27,RNA_pol_Rpb5_N|PF03871.10|2.4e-21 R_Transcript_174332:1-840(+)
DLTVDTPKITRLILYCVFSFPPESSNSQVHITVTQVVRLRERERIQTNTINQHSREMEMEGEVNGELGRCLSSFVDDGTVESHRYFLARRTVLEMLKDRGFAVPISEIELSLHEFRDIYGPKPDPDRLRVSTALRSDPSKKILVIFCGPQLVKVSVMRGIAAQIVNKESLSGLIIILQNKITNQAQKAVDVLPFKVEIFQITDLLVNVTKHVLKPKHIVLTDREKQKLLQKYNLEEKQLPRMSVKDAISRYYGLEKGQVVKVMYSGEITQSHITYRCVW*

Click here to download the sequence:
Link to NCBI Protein BLAST