Transcript Information: R_Transcript_174717.p1


Annotated TAIR IDAT3G59850.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:22109343-22111566 | Reverse length=388
E-Value2.2E-175
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.81124270909861
Replicate 20.93316890739102
Replicate 31.2443166101614
Condition 2: 8 Hour
Replicate 10.78596603534367
Replicate 20.71775670107509
Replicate 31.8375704578663
Condition 3: 24 Hour
Replicate 11.7572642569354
Replicate 22.7228714679725
Replicate 31.3510928819072


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_174717.p1 GENE.R_Transcript_174717~~R_Transcript_174717.p1 ORF type:5prime_partial len:405 (+),score=27.49,Glyco_hydro_28|PF00295.13|6.9e-80,Pectate_lyase_3|PF12708.3|2.2e-10,Pectate_lyase_3|PF12708.3|3.6e+03,Beta_helix|PF13229.2|31,Beta_helix|PF13229.2|1.7e-06,Beta_helix|PF13229.2|2e+03 R_Transcript_174717:1-1215(+)
CTCAAATCTCTAGCAAATTATATGCGACTCAAATTAAAAATGCTGCCCTATTTATTGACCTTATTATTTATTTTTCTAAACCCAAGTCTTGCAATCGGATTATCCAAATACAATGTGGTAAGCCTAGGGGCAAGACCCGATGGAAAAACGGACACAACCAAAACATTTGTGAAAGCGTGGAATAAGGCTTGTGGATCAGTGGGAACTTCGATCATCTTAGTGCCTAAGGGAAGGTACTTGATCAAAAATGCCATTACTTTTAATGGGAGTAAGTGCAAAAGTCAAGCAATCAAATTCTTCATTAGGGGCACCATTGTGGGCCCCACCGATTTCCGAGCTCTCGGGAGCTCGGATACGTGGCTCTCGTTCGAGTATGTCACCGGAGTTACTATCTCCGGTGGGAACTTTGATGGGCGTGGCCGTGGTTTGTGGAGGTGCAAGATGTCTGGCAAGGGAGGCTGTGCTAGTGGCGCAACGACTTTATCCTTTACAAATTCCAAGAACATAGTGATAAGTAGATTGACATCTCTGAATAGCCAATTGTACCACATTGTGATCAATGGTTGCAAGAATGTCAATGTAAAAGGAGTGAAGATGATAGCTGCTGGAAACAGCCCCAACACTGATGGTTTGCATGTTCAATTCTCAACCGGTGTCACCATTATCAATTCTAAGATCAGCACCGGCGATGACTGCGTCTCGGTGGGTGCTGGCACTATGGGCCTCTGGATTCAGAACGTCGTTTGTGGTCCGGGACATGGAATTAGCATAGGAAGCTTAGGAAAAGAGTTGGATGAGCCTGGTGTGCAAAATGTGACTGTCAAAGATGTCACTTTTGTTGATACCCAAAACGGAGTAAGGATCAAATCTTGGGGAAGGCCTAGCAATGGTTTTGTGCACAATGTTGTATTCCAACATTGCACCATGGTCAATGTACAAAATCCTATCATAATTGACCAAAATTACTGTCCCCACAATGATGATTGTCCTGGAAAGGTGTCTGGTGTGAAGATTAGCGATGTCACTTATAAAGATATTCATGGAACTTCAGCCACAAAAATTGCTATGAAATTTGACTGTAGCTCAAAAAATCCTTGTCAAGATATTAAACTAGACAATATAAAGCTCACCTATGACAAACAACCAGCCGGATCAACATGCGTTCATGCTAAAGGATCAACCAAGGGTTTGGTGGTTCCCAAGAGTTGCTTATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_174717.p1 GENE.R_Transcript_174717~~R_Transcript_174717.p1 ORF type:5prime_partial len:405 (+),score=27.49,Glyco_hydro_28|PF00295.13|6.9e-80,Pectate_lyase_3|PF12708.3|2.2e-10,Pectate_lyase_3|PF12708.3|3.6e+03,Beta_helix|PF13229.2|31,Beta_helix|PF13229.2|1.7e-06,Beta_helix|PF13229.2|2e+03 R_Transcript_174717:1-1215(+)
LKSLANYMRLKLKMLPYLLTLLFIFLNPSLAIGLSKYNVVSLGARPDGKTDTTKTFVKAWNKACGSVGTSIILVPKGRYLIKNAITFNGSKCKSQAIKFFIRGTIVGPTDFRALGSSDTWLSFEYVTGVTISGGNFDGRGRGLWRCKMSGKGGCASGATTLSFTNSKNIVISRLTSLNSQLYHIVINGCKNVNVKGVKMIAAGNSPNTDGLHVQFSTGVTIINSKISTGDDCVSVGAGTMGLWIQNVVCGPGHGISIGSLGKELDEPGVQNVTVKDVTFVDTQNGVRIKSWGRPSNGFVHNVVFQHCTMVNVQNPIIIDQNYCPHNDDCPGKVSGVKISDVTYKDIHGTSATKIAMKFDCSSKNPCQDIKLDNIKLTYDKQPAGSTCVHAKGSTKGLVVPKSCL*

Click here to download the sequence:
Link to NCBI Protein BLAST