Transcript Information: R_Transcript_175000.p1


Annotated TAIR IDAT5G55960.1
Annotated Gene Nameunknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0118 (InterPro:IPR002549); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:22662726-22664762 | Forward length=648
E-Value3E-98
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.61231977643625
Replicate 20.10062124800143
Replicate 30.25614562807199
Condition 2: 8 Hour
Replicate 10.19557400117608
Replicate 20.3929228438547
Replicate 30.49293511269422
Condition 3: 24 Hour
Replicate 10.33006432116508
Replicate 20.24662430069336
Replicate 30.52446576725792


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_175000.p1 GENE.R_Transcript_175000~~R_Transcript_175000.p1 ORF type:3prime_partial len:626 (+),score=75.36 R_Transcript_175000:68-1942(+)
ATGGGATCAGTCCCTTGTTCTGTCACCGAAAGCTCTTCAAAGCCTGCCAGTCTACCTTGGAAGGAAATGTATCGATCAGCTTCCTTTCGGATGCCTAAATCAGACCCTTTTTCTGCGACTCAAACTGACACCTCTCAGGAATTACGCGAACTTCAAGTTACTGAGACAGCTGAAGAAAATGTATGCAATCACAGACTTTCTCAGATTAAAGGCGCTCAGCGGTCTCATTCAATGGACCACCATCAGCGATGCAACCTCAACCTCAATCTCGACCAAAATTCTTCCACCGTGCCTTGGGAAGCCATGTTTCGTTCTGCTTCTTTCAGAAGGTCTAATTTATCTCCTCGAGATCAAATTCCTACGATGGAGCACCAAACTCCAGTGGAAGAAATCAACACTGAATCGGAATCTCCTGACAATTCTGCAGATAGCGCGATGAAATCAGAAGACAGCACTGTGACAAGTACACCTGCAGAGACTTCAGAAACCATGGAAATGGTATCTCAACTGAAGACGACTTCTCGTTGTGATTCTGCTATGTGGCTTGCTCTGTATGTTACCTTAGCTCAAGCAGGACTAGCCCTTGTGATATTTCTGTTTTACGGATTCTTCAAATTGCTCGAAGAATATATTCGTCCGATTATTTGGGCAGCCTTGTGTTCAATTCCTTTGAGAGGAATCCAAGACATTCTCATCGATTTCTGGGCTGAGCCATTGAGAGGTGGACTGATAGACACCTTGTTGGCAGTTCCAGTAGCTGTATTAAGGGCTTGTTCGGGTACAATAATTGATGCCCGTGAAGTATTTTCTTGGGTCTTCTATGGTGAGAAGCTGGAGGATGTAACACCAGAGAAAAACGGCTTCCTGAGACTGTTCCGAAGGCTGGTTTCATTCAGTCTCTTTGTGTTTGCTTATGAGCAGATTGGCAGGTTTGGGGCTTGCACTCTCATCGGAGTAGCCTTCATGTTCAGCTCTAACCTCTCCTCGTCAACTATATCCGCAGTTTCTACTTTACGAAGTGACAGTTTTCGGTTAAGGAGCAACCCTACTACTTGCTCATCACCAGAAAGCAACCAGAAACTTCATCTACATAAGATTGGTAAGGTTATCAGTCACTGGATTCTGAGCAGGCTGAAAACAATATTAGCTGTGGCATTGATTGTTCTAATGATCATTGGAACAATAGCTGGTGTAATCTTCTTTTCATACCAGATAGGAGCCGAAGGAAAGGATGCAGTGATTTCGATCAAATCCCACATTGAGGACAGCAAGTATGCAGAGAAGCTCGGTATCAAGAAATGGATATATGAGAACAATGCCATGGAGCTGATGGATTGGTACACTTCCGAATGCTATGGAACTCTATTACAGCAAATAGACACTTTTGCCTCCAAATACAACTTGTCAGAGCTTGTAGAAGTACTGAAGCAATCTGTGATCACCCCATACACCAATTTCTCCGAAACGCAGGAAACAAAGTACACATTGAAGCTCGGAAATCTGATGGAGAAGCCGGTTTTAGACAAGGCAAAGTGCTTTGCAACTCAAGGAATGGATCTTTCCTTCCGAATATTGGCAAGCAGTAAGTTTATCCTAGATGGAAGCGCGCATTTCCTGCTCTACATAGGCCAATCGATGGTGTCGGGAGCAGCAGGGCTAGTGCAGTTTCTGATACAATCAACTGTATTTTTCTGGGTTCTGTACTATCTTCTGACATCAGATTCCGGTGGAGTGACCGAGCAAATCATGAAAATCATACCAGCACCAACATCTACGAAAACCCGATGTGTTCAGGCTCTCAACAATGCAATCTCAGGTGTGCTATTAGCCACAGCAGAGATAGCATTTTTTCAGTGCTCCTTCACTTGGCTTCTT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_175000.p1 GENE.R_Transcript_175000~~R_Transcript_175000.p1 ORF type:3prime_partial len:626 (+),score=75.36 R_Transcript_175000:68-1942(+)
MGSVPCSVTESSSKPASLPWKEMYRSASFRMPKSDPFSATQTDTSQELRELQVTETAEENVCNHRLSQIKGAQRSHSMDHHQRCNLNLNLDQNSSTVPWEAMFRSASFRRSNLSPRDQIPTMEHQTPVEEINTESESPDNSADSAMKSEDSTVTSTPAETSETMEMVSQLKTTSRCDSAMWLALYVTLAQAGLALVIFLFYGFFKLLEEYIRPIIWAALCSIPLRGIQDILIDFWAEPLRGGLIDTLLAVPVAVLRACSGTIIDAREVFSWVFYGEKLEDVTPEKNGFLRLFRRLVSFSLFVFAYEQIGRFGACTLIGVAFMFSSNLSSSTISAVSTLRSDSFRLRSNPTTCSSPESNQKLHLHKIGKVISHWILSRLKTILAVALIVLMIIGTIAGVIFFSYQIGAEGKDAVISIKSHIEDSKYAEKLGIKKWIYENNAMELMDWYTSECYGTLLQQIDTFASKYNLSELVEVLKQSVITPYTNFSETQETKYTLKLGNLMEKPVLDKAKCFATQGMDLSFRILASSKFILDGSAHFLLYIGQSMVSGAAGLVQFLIQSTVFFWVLYYLLTSDSGGVTEQIMKIIPAPTSTKTRCVQALNNAISGVLLATAEIAFFQCSFTWLL

Click here to download the sequence:
Link to NCBI Protein BLAST