Transcript Information: R_Transcript_175479.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-21
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.77769507827122
Replicate 20.47360076126988
Replicate 30.68892443898203
Condition 2: 8 Hour
Replicate 10.92052123861824
Replicate 20.84063465568367
Replicate 31.6832320625421
Condition 3: 24 Hour
Replicate 10.57538363979208
Replicate 20.27638169035811
Replicate 30.76798963813675


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_175479.p1 GENE.R_Transcript_175479~~R_Transcript_175479.p1 ORF type:3prime_partial len:399 (+),score=78.37,UBN2_3|PF14244.2|5.4e-36,Retrotrans_gag|PF03732.13|7.8e-07,Retrotrans_gag|PF03732.13|4.4e+03 R_Transcript_175479:651-1844(+)
ATGTCAGGGAGAAATAGTGTTGCTTACAGTGATTTGCAGAATCTACTTTTCTTACATCCTTCGGATGGACCTTCATCCATTTCAATTGAGGAAAAATTACTTGGAGCTGTGAACTATCGATCCTGGAAGAGGAATATGGAGATTGCTTTAGCCACAAAGCGCACACTAGGATTTGTGATTGGAACTGTGAAAAGAGTTGATGATGATACCACCAAAGCAGAACAATGGGACACATGTAATAGTATGGTAATTGCTTGGCTCCTGAATTCTATGATTGAATCTGTGAGACGTTCTGTGTTGTACATTGATTCTGCTTGTGCTATGTGGTTACACCTGGAGAATAGATTTTCTGTGAGTAATGGCTCTAGAAAGTACAAAATCAATAAAGAGATATATGACCTAAGACAAAATGGAGCTAGTATAAATGATTTTTATACTAAAATGAGGTGTCTGTGGGAGGAATTAGATTCTATGAGTAATCTGCCTAAAATTACTGAATTCACTGATGAAATCAAAACATTCTTGAAAGCCTTGGATAAACAACAAGAAGAACATAGGCTATTTCAATTCCTGAATGGATTGGACAACATTTACAACAATCAGAGAAGCAATCTTTTGTTCATGAATCCCTTGCCATCAGTGGAAATGGCTTGTTCCAATCTTCAACAGGAGGAGACCCAAAGAGACATATTGAATACTAATTCCTCTGAGATTGAATCTTCAGCTCTCTTCAGTAAGGGGGAGAATACATATAAGTGCACTGGTTGTGGTAAATCTGGTCATACTAAGGATAGGTGTTGGTCTGAAAATGGCTATCCTTCTTGGCATCCTCTTGCCAAGAAATTTCCACAAAAATCCAGAGGAAAAGAGAACTTTCAACAGGCTGGCTCAAAGAATATTCAGAGTCAGAACTGGAATAGATATGCTGTGCACAAACCAAAACCTTACAAACAGTCTGTTAACAATGTTCAAACATCTGATGGTGCTGCTACTGGTGTGTCTGGACCTATTTTTACTCAACAACAACTTGCTCAGATTCTTCAACATCTGCCTCACTTATCTAAGGGTGGTAAACTCTCTTCTGATTCTGATGAAGAATTAGACTCAAGCTTTGCAGGAGTGGAAAAGTCAAAGCCAAGGGGACAATCTACTTGTCTAATATTCGAATGGTGTTTGTGGCAAGTAAGCCTGTGG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_175479.p1 GENE.R_Transcript_175479~~R_Transcript_175479.p1 ORF type:3prime_partial len:399 (+),score=78.37,UBN2_3|PF14244.2|5.4e-36,Retrotrans_gag|PF03732.13|7.8e-07,Retrotrans_gag|PF03732.13|4.4e+03 R_Transcript_175479:651-1844(+)
MSGRNSVAYSDLQNLLFLHPSDGPSSISIEEKLLGAVNYRSWKRNMEIALATKRTLGFVIGTVKRVDDDTTKAEQWDTCNSMVIAWLLNSMIESVRRSVLYIDSACAMWLHLENRFSVSNGSRKYKINKEIYDLRQNGASINDFYTKMRCLWEELDSMSNLPKITEFTDEIKTFLKALDKQQEEHRLFQFLNGLDNIYNNQRSNLLFMNPLPSVEMACSNLQQEETQRDILNTNSSEIESSALFSKGENTYKCTGCGKSGHTKDRCWSENGYPSWHPLAKKFPQKSRGKENFQQAGSKNIQSQNWNRYAVHKPKPYKQSVNNVQTSDGAATGVSGPIFTQQQLAQILQHLPHLSKGGKLSSDSDEELDSSFAGVEKSKPRGQSTCLIFEWCLWQVSLW

Click here to download the sequence:
Link to NCBI Protein BLAST