Transcript Information: R_Transcript_176218.p1


Annotated TAIR IDAT1G13990.3
Annotated Gene Nameunknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3110 (InterPro:IPR021503); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:4794810-4796476 | Forward length=308
E-Value6.5E-53
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.4880131213086
Replicate 21.5975445968922
Replicate 34.3572598688333
Condition 2: 8 Hour
Replicate 15.1899387659922
Replicate 27.7776980317167
Replicate 35.4257531745722
Condition 3: 24 Hour
Replicate 12.7449552120081
Replicate 23.1165039736685
Replicate 31.9032786684259


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_176218.p1 GENE.R_Transcript_176218~~R_Transcript_176218.p1 ORF type:5prime_partial len:184 (+),score=44.93 R_Transcript_176218:2-553(+)
GCTCGCAAGGTACCAGAGAGATTAAAAGACTGTGATCGTGATATTGTGGCCTATGCATACACTGTTGAAGATCGTGAAGTTGTTGATCTTCCTAAAGTTTTGGATTCTAATCCATGGAGGGAAACTTCTAAACCTGTATATGTTCTAACACACAAGGAAAACCAACTCTGCACCATGAAAACTCGGAGGAATCGCAGCGAAGTTGAAAGAGAGTTTGGGTTGCTGTTTTCAAAAGGTCGAGAATGGGGCTCTGATTTTAGTAATCAAGCCAAGCAATCTAAGAATGGCAAAAGGTTTGAGATGCTTGTCGAGGATGTCAGGGAAGGTGTACTTGTATTTGAAGACCAAAACGATGCTGTCAAATATTGTGACCTATTGCAGGGAGGGGGTCAAGGATGTGAAGGTGTTGCAGAGATAGAAGCATCATCTGTTTTCGATCTTTGTCGAAAATCACAAGCTTTGGCGGTTTTGTTTCGCCGAGGGAGGACACCACCTCAACCTGAAAGCCTTGAGCTTAACTTGAAAGCACGCAAGCGATCCCTTGAAGACTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_176218.p1 GENE.R_Transcript_176218~~R_Transcript_176218.p1 ORF type:5prime_partial len:184 (+),score=44.93 R_Transcript_176218:2-553(+)
ARKVPERLKDCDRDIVAYAYTVEDREVVDLPKVLDSNPWRETSKPVYVLTHKENQLCTMKTRRNRSEVEREFGLLFSKGREWGSDFSNQAKQSKNGKRFEMLVEDVREGVLVFEDQNDAVKYCDLLQGGGQGCEGVAEIEASSVFDLCRKSQALAVLFRRGRTPPQPESLELNLKARKRSLED*

Click here to download the sequence:
Link to NCBI Protein BLAST