Transcript Information: R_Transcript_176425.p1


Annotated TAIR IDAT5G38510.1
Annotated Gene NameRhomboid-related intramembrane serine protease family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:15417839-15420002 | Reverse length=434
E-Value3.5E-98
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.6842860966801
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10.10508954912981
Replicate 20
Replicate 30.19475977060501
Condition 3: 24 Hour
Replicate 10.098531361492292
Replicate 20.094657763478873
Replicate 30.14090797008732


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_176425.p1 GENE.R_Transcript_176425~~R_Transcript_176425.p1 ORF type:complete len:466 (+),score=70.47,Rhomboid|PF01694.18|2.1e+03,Rhomboid|PF01694.18|3.4e-27 R_Transcript_176425:192-1589(+)
ATGTCTTGTATTCCACCATTACGCAGAAGCTTTAGTTCCGAATCTCATGTCATTCATGAGGGTCTCAGTTGCATTTCTACTGCACCCAGCAACTCCAGCAGTAAGCCTGTTGGTATTTTAGCAGCTAGCGAGAGAGTGAACTTGAACAGAAGAATTCAGTTATTACGAGAAGGTAACAACTGTGGAAGAAGGACAAAGACTTTGCTTATAAGGAATGAAGCTCCTGATATGTCAAGTGCAACATGCAAGTCGAAGATAAACCCCTCAACAGAGGTTTTATCTCCTATCTATTATGCCTCGGAGTCTAATTCTGTAGACCAGAATCAGAGATCCTTGGACGCAAACCTTGAAAAACTTGAGATTCATACCGACCAGATCGATGATCAAGCAAGAAAGGAATTGGAGTCTTTGGAAAGATATCTTGACACACTTAAAAAAGATGGAGAGACAAGACTACCTGTTTCTGGCAGGAGTATGTCAAACGCGTCCAAAGACTTGGCTAATGGCGATATTGAAATTGAAAGCAGCCAAACAAGGGAACTGAAAGGGTATTCAGGGCCAAGACACAAGAAAAGCAATATTTATGTTACCAAGTCTGTGTCATCTCCGGTGTATGATGAAAAAGAGAGTCGCAATTTATACCTCATAAGTATCTTACTGGCAATAAATATCGCGGTGTTCCTATTTGAGATAGCGAGCCCTGTAAGGAGTTCTGACTATAATCTCTATTCGTTGCCGCTGATGTATGGTGCCAAGGTTAATGATCTGATCATGGTTGGAGAATGGTGGAGGCTTGTGACACCAATGTTTCTGCATTCAGGACTTCTTGACATTGGACTTAGCTCTTGGGTGCTCCTTTCTTTTGGTCCTCAAGTTTGCAAAGGATATGGTACCTTGACATTCCTCTTGATATACATCCTGGGAGGAATTTCTGGAAACTATGCAAGCTTCCTTCATACCTCGGAGCCCACCATTGGTGGATCAGGACCCATGTTTGCTATAATTGGAGCTTGGCTAATCTATCAAGTTCAAAACAAAGATGTGCATGAGAAGGCACCTTCAGAGGTTATGTTTGACAAGGCTATCATTGCTACAGCTCTTAGCTTTGTGCTAGCAAACTTTGGGCCTATTGACGACTGGACAAATCTGGGAGCAGCCATATCAGGAATCATATACGGGTATTTCACATGCCCCGTACTGCAAGTAGATGATGCATCTACTGATGGTGGAAAGGGGAGAGTCAAGGATCAAATCACACTCATTAGACAGCCTGCTAATACTTGTAAATCTGTTATCATATTCACTCTCTTTCTTTCTGCTTTAAGTTCCTTGCTTTTCTTTGTGGAGTCTCCACTAGACAACCTGGAACTTGAGGAGCTTATCCAGAGTATTGAGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_176425.p1 GENE.R_Transcript_176425~~R_Transcript_176425.p1 ORF type:complete len:466 (+),score=70.47,Rhomboid|PF01694.18|2.1e+03,Rhomboid|PF01694.18|3.4e-27 R_Transcript_176425:192-1589(+)
MSCIPPLRRSFSSESHVIHEGLSCISTAPSNSSSKPVGILAASERVNLNRRIQLLREGNNCGRRTKTLLIRNEAPDMSSATCKSKINPSTEVLSPIYYASESNSVDQNQRSLDANLEKLEIHTDQIDDQARKELESLERYLDTLKKDGETRLPVSGRSMSNASKDLANGDIEIESSQTRELKGYSGPRHKKSNIYVTKSVSSPVYDEKESRNLYLISILLAINIAVFLFEIASPVRSSDYNLYSLPLMYGAKVNDLIMVGEWWRLVTPMFLHSGLLDIGLSSWVLLSFGPQVCKGYGTLTFLLIYILGGISGNYASFLHTSEPTIGGSGPMFAIIGAWLIYQVQNKDVHEKAPSEVMFDKAIIATALSFVLANFGPIDDWTNLGAAISGIIYGYFTCPVLQVDDASTDGGKGRVKDQITLIRQPANTCKSVIIFTLFLSALSSLLFFVESPLDNLELEELIQSIE*

Click here to download the sequence:
Link to NCBI Protein BLAST