Transcript Information: R_Transcript_176580.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-26
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.1721053610786
Replicate 22.3450413451969
Replicate 34.2243594008489
Condition 2: 8 Hour
Replicate 11.9715891256223
Replicate 23.426732541896
Replicate 32.9702635560633
Condition 3: 24 Hour
Replicate 11.3118746987259
Replicate 21.0884413478467
Replicate 31.7623866111528


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_176580.p1 GENE.R_Transcript_176580~~R_Transcript_176580.p1 ORF type:complete len:385 (+),score=66.56,UBN2_3|PF14244.2|5e-42,UBN2_3|PF14244.2|8.7e+03,Retrotrans_gag|PF03732.13|8.1e-09 R_Transcript_176580:394-1548(+)
ATGTCTACAGATTCTACAAATTCAGGTACCTCTACAGTCTTGGATGCTAGTAATCCTTTGTACCTACATCCAGCAGATCATCCTGGTTTGTTGCTTGTTTCTAGTCCTTTCAATGGGAGAGGATATGGTGCTTGGAAACGAGCATTAATGATTGCCTTATCTGCTAAGAATAAGATTTGTATGATTGATGGAACCTCTACTCAACCAGTGGCTACTTGTCCTGAATTTAGACATTGGCAAAGGTGCAATTATATGGTGATATCTTGGTTACTGAATGCTTTAAGTAAGGATATTACTGAGAGTGTTTTATATAACACAACAGCAAGGGAAATTTGGCAGGAATTAGAAGAAAGATTTGGTAAATGTAATGGTGCTCAGCTTTATCATATGCAATCTGAGGTAAATAATCTCTCTCAAGGTAGTTCTGATATTGCTACCTATTACACAAGAGCAAAAAGGCTTTGGGATGAGTTGAGTACAGTGGATGCCTTACCTGTTTGTACATGTGGTGCTGCACAATTGTTCTCTAAAAGGGAACAAGATAGAAGGCTAATACAATTTTTAATGGGATTAAATGAAGATTATAAAACAGCTAGAGGAAATATTCTAATGATGCAGCCCTTACCTAGTCTTGTTGTGGCTTATTCTTTGCTCACACAAGATCAGGAACAAAAGGAATTTTCTACACCCGTTAATTCTTTCACTGATTCAGCAGCAATGTATTCTAGTGCACAGAAATCCTTTCATGGTCAGAATAATGCTCAAGGTTCTAAATGGAGAAATGATGGCAAACCTACTGATGGTAGTAAGCAAAGATATTTTTGTAATTTCTGTAAGAAGAATGGGCATACTGAGGACAGATGTTGGAAGAAAAATGGATTTCCACCTAATCATCCTTTGCATAGAGGTTTCAAAGCCAAGAAAATGACAGCAGCTGCAAATTTTTCCACTTCTGATCAAACTGATCTGCTAGCTGGTTTTACTCCTGAGCAATGCACTCAGATGGTGAATGCTTTACAATCTAAATTGTCAAACTCTGCCACTGTTTCTGGAGGTTCTCACAGCAGTTCCAATACTGCTCAATCAGATCATGCTTTTGCCAACTTTAAAAAAAAAAAACTTATCCTCTGTACTATTATTTTATGTCAAATATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_176580.p1 GENE.R_Transcript_176580~~R_Transcript_176580.p1 ORF type:complete len:385 (+),score=66.56,UBN2_3|PF14244.2|5e-42,UBN2_3|PF14244.2|8.7e+03,Retrotrans_gag|PF03732.13|8.1e-09 R_Transcript_176580:394-1548(+)
MSTDSTNSGTSTVLDASNPLYLHPADHPGLLLVSSPFNGRGYGAWKRALMIALSAKNKICMIDGTSTQPVATCPEFRHWQRCNYMVISWLLNALSKDITESVLYNTTAREIWQELEERFGKCNGAQLYHMQSEVNNLSQGSSDIATYYTRAKRLWDELSTVDALPVCTCGAAQLFSKREQDRRLIQFLMGLNEDYKTARGNILMMQPLPSLVVAYSLLTQDQEQKEFSTPVNSFTDSAAMYSSAQKSFHGQNNAQGSKWRNDGKPTDGSKQRYFCNFCKKNGHTEDRCWKKNGFPPNHPLHRGFKAKKMTAAANFSTSDQTDLLAGFTPEQCTQMVNALQSKLSNSATVSGGSHSSSNTAQSDHAFANFKKKKLILCTIILCQI*

Click here to download the sequence:
Link to NCBI Protein BLAST