Transcript Information: R_Transcript_176689.p1


Annotated TAIR IDAT3G62890.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:23246168-23247973 | Forward length=573
E-Value1.5E-266
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.76436184902507
Replicate 20.3516968243936
Replicate 30.46043693660608
Condition 2: 8 Hour
Replicate 10.65623758652583
Replicate 20.52437578857052
Replicate 30.7297129897643
Condition 3: 24 Hour
Replicate 10.73065048128372
Replicate 20.59109571566036
Replicate 31.0632218357119


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_176689.p1 GENE.R_Transcript_176689~~R_Transcript_176689.p1 ORF type:complete len:597 (+),score=83.41,PPR|PF01535.16|2.1e+02,PPR|PF01535.16|7.2e+02,PPR|PF01535.16|0.0018,PPR|PF01535.16|3.4e-05,PPR|PF01535.16|5.5e-09,PPR|PF01535.16|5.7e+02,PPR|PF01535.16|0.018,PPR|PF01535.16|9.3e-06,PPR|PF01535.16|23,PPR|PF01535.16|0.15,PPR|PF01535.16|8.5e+02,PPR|PF01535.16|10,PPR|PF01535.16|3.5e+03,PPR_2|PF13041.2|0.13,PPR_2|PF13041.2|0.13,PPR_2|PF13041.2|0.0033,PPR_2|PF13041.2|5.5e-12,PPR_2|PF13041.2|6.7,PPR_2|PF13041.2|6e-09,PPR_2|PF13041.2|7.6,PPR_2|PF13041.2|2.4e+03,DYW_deaminase|PF14432.2|8.1e-40,PPR_3|PF13812.2|23,PPR_3|PF13812.2|0.14,PPR_3|PF13812.2|2,PPR_3|PF13812.2|0.0002,PPR_3|PF13812.2|0.096,PPR_3|PF13812.2|0.84,PPR_3|PF13812.2|1.6e+03,PPR_3|PF13812.2|3.1,PPR_3|PF13812.2|1.2,PPR_1|PF12854.3|2e+03,PPR_1|PF12854.3|1.6e+03,PPR_1|PF12854.3|0.13,PPR_1|PF12854.3|2.1,PPR_1|PF12854.3|3.5e-05,PPR_1|PF12854.3|0.48,PPR_1|PF12854.3|34,PPR_1|PF12854.3|1.4e+02,PPR_1|PF12854.3|0.22 R_Transcript_176689:119-1909(+)
ATGAAAACCTTGTGGGATACAGGAAGAGTAGTTAAATGTCAATCCATTTCCCCGCCATTTCACATAGGACATGAGATGAGAGCTACACTAAAGCAGAATCTGATATCACCAACACATCCAAGTCTCCATCTTTCTCATTCAACCATTGAATCTTTCATCTGGAACACCATTATTCGAGCTCATTCCCAATTCCCTTCTAGCATATCCTTCTCCCCAATATCTGTCTTTCTTCGCATGCGCCGTCATGGTGTCAAACCTGATTCCCATACTTTCCCATTCCTTCGACAATCCTTAAACTCTCCAACCCATCTCATTTTAGGCCAAAAGATTCATGCCCAGATTTTCCATTTTGGGTTTCAAAGCGATGCCTATGTGGGCACTTCTCTCATAAACACGTACTCTTCTTGTGGTGACTTGGGCCTTGCCCACCAATTGTTCGATGAAATGCCTGAACGAGACTTACCTTCTTGGAATTCCATTATTAATGCGAATGTTCAAGTGGGGTTGCTTAATAAAGCTAGGAAATTGTTTTATGGGATGAAGGAGAGGAATGTAATTACTTGGAGTTGTATGATTAATGGTTATGTAAAGTGGGGTGAGTATAAGGAAGCTCTTCAGCTGTTTAGAGATATGCAAGTTTTGGGTGTTGATAATGTTAGACCTAATGAATTCACAATGTCAGGTGTTCTTTCAGCTTGTGGGAGGTTAGGGGCTCTGGAACATGGGAAGTGGGCTCATGCTTATATTGAAAAGAGTGGCATGAAGGTCGATGTTATTTTGGGAACTGCTTTGATTGATATGTATGCAAAATGTGGGAGCATCGAAAGGGCCAAGTGGGTGTTTGACCAATTGGGATCTAATAAGGATGTTAAGGCTTGGAGTGTCATGATCTCAGGCTTAGCTATGCACGGACATGGTGAAGAATGTTTCCATTTATTCTCAAAGATGTTGAATCATGGTGTTGAGCCTAATGCGATCACATTTTTGGGTATCCTTTGTGCTTGTGTTCACTGCGGCTTGGTACCAGAAGGGGATAAGTATTTTGCAATGATGAACAAAGAATTTGATATTGCCCCTTCCATTCAACACTATGGCTGCATGGTTGACCTATACGGAAGGGCTGGTCTCATAGCGAAGGCATGGAATGTGGTCAAGTCAATGCCAATGGAACCTGATATCCTTATTTGGGGAGCCTTACTGAGTGGATCTAGAGTGCACGGGAATATTGAAACTTGTGAGCTAGCGCTTAGAAAACTAATTGAGCTAGAACCTTCAAATAGTGGAGCTCATGTGCTTCTTTCTAATGTTTATGCCAAGATGGGTAGGTGGAAAGATGTAAGGCATATTAGGGGTCTCATGGAAGCAAACGGAATAAAGAAGGTTCCTGGTTGTAGTTTGGTTGAAATTGGGGGTGCCGTTCATGAGTTTTCTGCTGGAGATGAGTCTCATCCTGAGACAAGAGAGATATACTTGATGGTACAAGAGATCATGAATCGATTGAGGATGGAAGGATACGTTGTAGACACCAAAGAAGTGTTGCTTGATTTAGATGAGGAAGCAAAAGAGATCTCCTTATCATTTCATAGCGAAAAATTAGCAGTTGCCTATGCCTTGTTGAAGACAAGTGCCGGCACCCCCATACGCATTGTCAAAAACCTTAGGATATGTGGTGACTGTCATGAAGCAATAAAGATTATTTCAAGGGTGTACAATCGAGAGATTATCGTTCGAGATTGCAACAGGTTCCATCACTTCAACCATGGTATATGCTCTTGTAAAGATTATTGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_176689.p1 GENE.R_Transcript_176689~~R_Transcript_176689.p1 ORF type:complete len:597 (+),score=83.41,PPR|PF01535.16|2.1e+02,PPR|PF01535.16|7.2e+02,PPR|PF01535.16|0.0018,PPR|PF01535.16|3.4e-05,PPR|PF01535.16|5.5e-09,PPR|PF01535.16|5.7e+02,PPR|PF01535.16|0.018,PPR|PF01535.16|9.3e-06,PPR|PF01535.16|23,PPR|PF01535.16|0.15,PPR|PF01535.16|8.5e+02,PPR|PF01535.16|10,PPR|PF01535.16|3.5e+03,PPR_2|PF13041.2|0.13,PPR_2|PF13041.2|0.13,PPR_2|PF13041.2|0.0033,PPR_2|PF13041.2|5.5e-12,PPR_2|PF13041.2|6.7,PPR_2|PF13041.2|6e-09,PPR_2|PF13041.2|7.6,PPR_2|PF13041.2|2.4e+03,DYW_deaminase|PF14432.2|8.1e-40,PPR_3|PF13812.2|23,PPR_3|PF13812.2|0.14,PPR_3|PF13812.2|2,PPR_3|PF13812.2|0.0002,PPR_3|PF13812.2|0.096,PPR_3|PF13812.2|0.84,PPR_3|PF13812.2|1.6e+03,PPR_3|PF13812.2|3.1,PPR_3|PF13812.2|1.2,PPR_1|PF12854.3|2e+03,PPR_1|PF12854.3|1.6e+03,PPR_1|PF12854.3|0.13,PPR_1|PF12854.3|2.1,PPR_1|PF12854.3|3.5e-05,PPR_1|PF12854.3|0.48,PPR_1|PF12854.3|34,PPR_1|PF12854.3|1.4e+02,PPR_1|PF12854.3|0.22 R_Transcript_176689:119-1909(+)
MKTLWDTGRVVKCQSISPPFHIGHEMRATLKQNLISPTHPSLHLSHSTIESFIWNTIIRAHSQFPSSISFSPISVFLRMRRHGVKPDSHTFPFLRQSLNSPTHLILGQKIHAQIFHFGFQSDAYVGTSLINTYSSCGDLGLAHQLFDEMPERDLPSWNSIINANVQVGLLNKARKLFYGMKERNVITWSCMINGYVKWGEYKEALQLFRDMQVLGVDNVRPNEFTMSGVLSACGRLGALEHGKWAHAYIEKSGMKVDVILGTALIDMYAKCGSIERAKWVFDQLGSNKDVKAWSVMISGLAMHGHGEECFHLFSKMLNHGVEPNAITFLGILCACVHCGLVPEGDKYFAMMNKEFDIAPSIQHYGCMVDLYGRAGLIAKAWNVVKSMPMEPDILIWGALLSGSRVHGNIETCELALRKLIELEPSNSGAHVLLSNVYAKMGRWKDVRHIRGLMEANGIKKVPGCSLVEIGGAVHEFSAGDESHPETREIYLMVQEIMNRLRMEGYVVDTKEVLLDLDEEAKEISLSFHSEKLAVAYALLKTSAGTPIRIVKNLRICGDCHEAIKIISRVYNREIIVRDCNRFHHFNHGICSCKDYW*

Click here to download the sequence:
Link to NCBI Protein BLAST