Transcript Information: R_Transcript_176692.p1


Annotated TAIR IDAT3G62890.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:23246168-23247973 | Forward length=573
E-Value6E-163
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.42572503684475
Replicate 20.48970963070083
Replicate 30.40070094920383
Condition 2: 8 Hour
Replicate 10.14277472272446
Replicate 20.977881130081
Replicate 31.0054828040448
Condition 3: 24 Hour
Replicate 10.40159429552835
Replicate 20.51440837062571
Replicate 30.7019380511833


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_176692.p1 GENE.R_Transcript_176692~~R_Transcript_176692.p1 ORF type:complete len:343 (+),score=48.84,DYW_deaminase|PF14432.2|1.6e+03,DYW_deaminase|PF14432.2|2.9e-40,PPR|PF01535.16|4.5,PPR|PF01535.16|4.6e-06,PPR|PF01535.16|1.5,PPR|PF01535.16|0.073,PPR|PF01535.16|3.7e+02,PPR|PF01535.16|5.1,PPR|PF01535.16|1.8e+03,PPR_2|PF13041.2|5.3e+03,PPR_2|PF13041.2|4e-09,PPR_2|PF13041.2|30,PPR_2|PF13041.2|4,PPR_2|PF13041.2|3.6e+03,PPR_2|PF13041.2|1.1e+03,PPR_3|PF13812.2|17,PPR_3|PF13812.2|0.41,PPR_3|PF13812.2|8.6e+02,PPR_3|PF13812.2|1.5,PPR_3|PF13812.2|0.59,PPR_1|PF12854.3|6.5e+02,PPR_1|PF12854.3|17,PPR_1|PF12854.3|4.8e+02,PPR_1|PF12854.3|0.075,PPR_1|PF12854.3|1.7e+03 R_Transcript_176692:928-1956(+)
ATGTCAACTCAACTCAAAAAAAAAAAAAAAAAAAAAATGTATTCAAAATGTGGGAGCATTGAAAGGGCCAAGTGGGTGTTTGACCAATTGGGATCTAATAAGGATGTTAAGGCTTGGAGTGTCATGATCTCAGGCTTAGCTATGCACGGACATGGTGAAGAATGTTTCCATTTATTCTCAAAGATGTTGAATCATGGTGTTGAGCCTAACGCGATTTCATTTTTGGGTATGCTTTGTGCTTGTGTTCACTGTGGCTTGGTACCAGAAGGGGAGAAGTATTTTACAATGATGAACAAAGCCTTTGACATTCCTCCTTCAATTCAACACTATGGCTGCATGGTTGACCTATACGGAAGGGCTGGTCTCATAGCGAAGGCATGGAATGTGGTCAAGTCCATGCCAATGGAGCCTGATGTCCTTATTTGGGGAGCTTTGCTGAGCGGATCTAGAGTGCACGGGAATATTGAAACTTGTGAGCTAGCGCTTAGAAAACTAATTGAGCTAGAACCTTCAAATAGTGGAGCTCATGTGCTTCTTTCTAATGTTTATGCCAAGATGGGTAGGTGGAAAGATGTAAGGCATATTAGGGGTCTCATGGAAGCAAACGGAATAAAGAAGGTTCCTGGTTGTAGTTTGGTTGAAATTGGGGGTGCCGTTCATGAGTTTTCTGCTGGAGATGAGTCTCATCCTGAGACAAGAGAGATATACTTGATGGTACAAGAGATCATGAATCGATTGAGGATGGAAGGATACGTTGTAGACACCAAAGAAGTGTTGCTTGATTTAGATGAGGAAGCAAAAGAGATCTCCTTATCATTTCATAGCGAAAAATTAGCAGTTGCCTATGCCTTGTTGAAGACAAGTGCCGGCACCCCCATACGCATTGTCAAAAACCTTAGGATATGTGGTGACTGTCATGAAGCAATAAAGATTATTTCAAGGGTGTACAATCGAGAGATTATCGTTCGAGATTGCAACAGGTTCCATCACTTCAACCATGGTATATGCTCTTGTAAAGATTATTGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_176692.p1 GENE.R_Transcript_176692~~R_Transcript_176692.p1 ORF type:complete len:343 (+),score=48.84,DYW_deaminase|PF14432.2|1.6e+03,DYW_deaminase|PF14432.2|2.9e-40,PPR|PF01535.16|4.5,PPR|PF01535.16|4.6e-06,PPR|PF01535.16|1.5,PPR|PF01535.16|0.073,PPR|PF01535.16|3.7e+02,PPR|PF01535.16|5.1,PPR|PF01535.16|1.8e+03,PPR_2|PF13041.2|5.3e+03,PPR_2|PF13041.2|4e-09,PPR_2|PF13041.2|30,PPR_2|PF13041.2|4,PPR_2|PF13041.2|3.6e+03,PPR_2|PF13041.2|1.1e+03,PPR_3|PF13812.2|17,PPR_3|PF13812.2|0.41,PPR_3|PF13812.2|8.6e+02,PPR_3|PF13812.2|1.5,PPR_3|PF13812.2|0.59,PPR_1|PF12854.3|6.5e+02,PPR_1|PF12854.3|17,PPR_1|PF12854.3|4.8e+02,PPR_1|PF12854.3|0.075,PPR_1|PF12854.3|1.7e+03 R_Transcript_176692:928-1956(+)
MSTQLKKKKKKKMYSKCGSIERAKWVFDQLGSNKDVKAWSVMISGLAMHGHGEECFHLFSKMLNHGVEPNAISFLGMLCACVHCGLVPEGEKYFTMMNKAFDIPPSIQHYGCMVDLYGRAGLIAKAWNVVKSMPMEPDVLIWGALLSGSRVHGNIETCELALRKLIELEPSNSGAHVLLSNVYAKMGRWKDVRHIRGLMEANGIKKVPGCSLVEIGGAVHEFSAGDESHPETREIYLMVQEIMNRLRMEGYVVDTKEVLLDLDEEAKEISLSFHSEKLAVAYALLKTSAGTPIRIVKNLRICGDCHEAIKIISRVYNREIIVRDCNRFHHFNHGICSCKDYW*

Click here to download the sequence:
Link to NCBI Protein BLAST