Transcript Information: R_Transcript_176818.p1


Annotated TAIR IDAT5G44230.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:17814336-17816309 | Forward length=657
E-Value2.1E-258
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.065171960626
Replicate 21.5564579733716
Replicate 31.8713522393226
Condition 2: 8 Hour
Replicate 12.1485327790321
Replicate 22.2327052973045
Replicate 33.4051432933858
Condition 3: 24 Hour
Replicate 14.1678318718979
Replicate 23.6703153978268
Replicate 33.8079970332726


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_176818.p1 GENE.R_Transcript_176818~~R_Transcript_176818.p1 ORF type:complete len:661 (+),score=105.55,PPR|PF01535.16|8.1e+03,PPR|PF01535.16|9.6e-07,PPR|PF01535.16|2.1e+03,PPR|PF01535.16|8.9e-05,PPR|PF01535.16|0.00086,PPR|PF01535.16|4.8e-07,PPR|PF01535.16|3.7e+03,PPR|PF01535.16|1.1e-05,PPR|PF01535.16|4.6e-08,PPR|PF01535.16|0.14,PPR|PF01535.16|1.1,PPR|PF01535.16|8.5e+02,PPR|PF01535.16|7,PPR_2|PF13041.2|2.6e-08,PPR_2|PF13041.2|0.00028,PPR_2|PF13041.2|0.059,PPR_2|PF13041.2|4.5e-09,PPR_2|PF13041.2|3.5e-05,PPR_2|PF13041.2|2.5e-12,PPR_2|PF13041.2|75,PPR_2|PF13041.2|1.2e+02,PPR_2|PF13041.2|4.9e+02,PPR_3|PF13812.2|0.14,PPR_3|PF13812.2|0.047,PPR_3|PF13812.2|0.019,PPR_3|PF13812.2|0.0074,PPR_3|PF13812.2|0.027,PPR_3|PF13812.2|7.4e-06,PPR_3|PF13812.2|0.096,PPR_3|PF13812.2|0.35,PPR_3|PF13812.2|0.79,DYW_deaminase|PF14432.2|7.1e-42,PPR_1|PF12854.3|0.1,PPR_1|PF12854.3|3.8e+03,PPR_1|PF12854.3|0.0074,PPR_1|PF12854.3|0.015,PPR_1|PF12854.3|0.0011,PPR_1|PF12854.3|0.00042,PPR_1|PF12854.3|1.8e-08,PPR_1|PF12854.3|1.1,PPR_1|PF12854.3|33,TPR_14|PF13428.2|22,TPR_14|PF13428.2|8.9e+02,TPR_14|PF13428.2|39,TPR_14|PF13428.2|1.1e+03,TPR_14|PF13428.2|66,TPR_14|PF13428.2|40,TPR_14|PF13428.2|1.6e+04 R_Transcript_176818:301-2283(+)
ATGCGCAGTCCAGGACCACTTCGTCTCTGCACAAAAACATTACGCCAAATTTGCTTTCAGCAGATTAACTCCCCCTCTAATTCCAATCCTCACCACAAACATCCCCAGTCTTTCTCCTTTCATCCAAACCACCAAGACCAAATATCAGTCATAGAATCCCGTATAACCTCTCTCCTTGATGGCTGCACGAACCTCAACCATCTCAAACGAGTTCATGCCCACATCTACCGTTGTGGTCTCCACCACAACTCCTATCTTCTCACCAAACTCATTCGCATTCTCACTAAACTCAACTCTCCTATGCACACCTACCCCCACCTTGTTTTCTCCCAACTCCGTCACCCGAACCCGTTTACTTGGACCGCTATGATTCGTGGGTATGCCGTTAATGGGCCTGTCTCTGAGTCTATAGCTTTGTACCGTTGTATGAGGAGGGATGGAGTTAGGCCCATGTCTTTCACCTTCTCTGCCTTGTTCATGGCCTGTACTTCTTTGAGAGATATTGGTTTGGGCCAGCAAATGCATGGACAGTTGTTTAAATTTGGTGGGTTTGAGTCAGATTTGTTAGTGGGTAATGCTTTGATTGACACGTACGTGAAATGTGGGGCGGTGGATACTGCACGCGAGATGTTCGACGAAATGCTTGAGAGAGATGTAATTTCTGCTACGTCCTTGATTGTTGCGTATGCCAAGAGTGGAGATATGAAGGTTGCTAGGGAGTTGTTTGATGAGCTCCTTTTGAAGGATGTGGTGGTCTGGACTGCCATGATCACGAGCTATGCGCAGAATGCTATGCCTAAGGAGGCTTTGGAGTTGTTTGAGAGAATGCAATGTGGTGGGTTTAAGGCTGATGAATTTACTTTGGTTGGTGTTATCTCTGCCTGTGGTCAGCTGGGGACAACTAAGTACGCCGCTTGGATCCGTGATATTGCTGAAGAGTCAGGGCATGGGCCTGTTCGAAATGTTGTTATTGGGTCTGCTTTAATAGATATGTATTCAAAGTGTGGGAGGGTAGACGATGCATATGAGATTTTCAAGGTCATGATTGAAAGAAATGTGTACACTTATAGTTCTATGATTGCGGGATTCGCAGTGAATGGCCGCTTTGATGAGGCGATGCAATTGTTCTACCAGATGGAGAAGGTGGGTTTAAAGCCAAATGAGGTCACCTTTGTTGGGGTGCTTACAGCTTGTAGTCATGCAGGGATGGTGGAAGAAGGCCGTCGGTTATTTGGGATCATGGAGACGATTTATGGTGTCACGCGTACAGCAGATCATTATGCTTGTATGGCTGATCTTCTTGGAAGATCTGGCCACTTGGAAGAGGCTCTTGACCTTGCCAAATCGATGCCATTACATCCTCATGGGGGTATTTGGGGAGCTCTGCTTGGAGCTTGTAGCATTCATAACAATCCTGATATAGCTGAGATTGCTGCCGGCCATTTATTTGAACTTGAACCTAATAGCATAGGCAACTATGTCGTGCTATCAAATATACTGGCATCAGCTGGTAGATGGGATCGTGTTGCAGCAGTGAGAAAACTGATGAGGAAGAAAGGTTTGAGAAAGAATCCTGCTTGTAGCTGGTTGGAAGGAAAGAAAGGAAGCATTCATGAATTTTTTGCAGGAGACCTGACCCATCCGAGGTTCAAAGAGATTAAACACATGTTGGAGGACCTTCTTGATAAGTTGAAGCTTCACGGATACCAGCCAATCCTAGGATCAGTGAGTTATGACATAAGTGATGATGACAAGAAGCAATTGTTGATGACTCACAGTGAGAAGCTAGCATTAGCATTTGGATTGCTGACAAGTGATTTCAACGAAACAATCAGGATTATGAAGAACCTTCGAATTTGTGAGGATTGCCATGCTTTCATGTGTGGTGCTTCCAAAATTACAGGGAGGGAGATTGTTGTGAGAGATAGCATGAGATTTCACCATTTTCGTGATGGGTCATGCTCCTGTAGAAACTTCTGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_176818.p1 GENE.R_Transcript_176818~~R_Transcript_176818.p1 ORF type:complete len:661 (+),score=105.55,PPR|PF01535.16|8.1e+03,PPR|PF01535.16|9.6e-07,PPR|PF01535.16|2.1e+03,PPR|PF01535.16|8.9e-05,PPR|PF01535.16|0.00086,PPR|PF01535.16|4.8e-07,PPR|PF01535.16|3.7e+03,PPR|PF01535.16|1.1e-05,PPR|PF01535.16|4.6e-08,PPR|PF01535.16|0.14,PPR|PF01535.16|1.1,PPR|PF01535.16|8.5e+02,PPR|PF01535.16|7,PPR_2|PF13041.2|2.6e-08,PPR_2|PF13041.2|0.00028,PPR_2|PF13041.2|0.059,PPR_2|PF13041.2|4.5e-09,PPR_2|PF13041.2|3.5e-05,PPR_2|PF13041.2|2.5e-12,PPR_2|PF13041.2|75,PPR_2|PF13041.2|1.2e+02,PPR_2|PF13041.2|4.9e+02,PPR_3|PF13812.2|0.14,PPR_3|PF13812.2|0.047,PPR_3|PF13812.2|0.019,PPR_3|PF13812.2|0.0074,PPR_3|PF13812.2|0.027,PPR_3|PF13812.2|7.4e-06,PPR_3|PF13812.2|0.096,PPR_3|PF13812.2|0.35,PPR_3|PF13812.2|0.79,DYW_deaminase|PF14432.2|7.1e-42,PPR_1|PF12854.3|0.1,PPR_1|PF12854.3|3.8e+03,PPR_1|PF12854.3|0.0074,PPR_1|PF12854.3|0.015,PPR_1|PF12854.3|0.0011,PPR_1|PF12854.3|0.00042,PPR_1|PF12854.3|1.8e-08,PPR_1|PF12854.3|1.1,PPR_1|PF12854.3|33,TPR_14|PF13428.2|22,TPR_14|PF13428.2|8.9e+02,TPR_14|PF13428.2|39,TPR_14|PF13428.2|1.1e+03,TPR_14|PF13428.2|66,TPR_14|PF13428.2|40,TPR_14|PF13428.2|1.6e+04 R_Transcript_176818:301-2283(+)
MRSPGPLRLCTKTLRQICFQQINSPSNSNPHHKHPQSFSFHPNHQDQISVIESRITSLLDGCTNLNHLKRVHAHIYRCGLHHNSYLLTKLIRILTKLNSPMHTYPHLVFSQLRHPNPFTWTAMIRGYAVNGPVSESIALYRCMRRDGVRPMSFTFSALFMACTSLRDIGLGQQMHGQLFKFGGFESDLLVGNALIDTYVKCGAVDTAREMFDEMLERDVISATSLIVAYAKSGDMKVARELFDELLLKDVVVWTAMITSYAQNAMPKEALELFERMQCGGFKADEFTLVGVISACGQLGTTKYAAWIRDIAEESGHGPVRNVVIGSALIDMYSKCGRVDDAYEIFKVMIERNVYTYSSMIAGFAVNGRFDEAMQLFYQMEKVGLKPNEVTFVGVLTACSHAGMVEEGRRLFGIMETIYGVTRTADHYACMADLLGRSGHLEEALDLAKSMPLHPHGGIWGALLGACSIHNNPDIAEIAAGHLFELEPNSIGNYVVLSNILASAGRWDRVAAVRKLMRKKGLRKNPACSWLEGKKGSIHEFFAGDLTHPRFKEIKHMLEDLLDKLKLHGYQPILGSVSYDISDDDKKQLLMTHSEKLALAFGLLTSDFNETIRIMKNLRICEDCHAFMCGASKITGREIVVRDSMRFHHFRDGSCSCRNFW*

Click here to download the sequence:
Link to NCBI Protein BLAST