Transcript Information: R_Transcript_177965.p1


Annotated TAIR IDAT5G12010.1
Annotated Gene Nameunknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:3877975-3879483 | Reverse length=502
E-Value1.8E-55
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.7764757638516
Replicate 21.7660439602494
Replicate 32.7830615771026
Condition 2: 8 Hour
Replicate 13.2037580304807
Replicate 23.9706238783414
Replicate 37.6338549338076
Condition 3: 24 Hour
Replicate 12.3601484065864
Replicate 22.6796108932477
Replicate 34.9093917054723


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_177965.p1 GENE.R_Transcript_177965~~R_Transcript_177965.p1 ORF type:5prime_partial len:107 (-),score=26.12,DDE_Tnp_4|PF13359.2|7.5e-25 R_Transcript_177965:173-493(-)
CCTAAAGGGGTGTTCACTGATGTTTGTATTGGGTGGCCTGGTTCAATGCCTGATGATAAGGTGTTGGAGAAATCAGCATTGTATCAGAGGGGTGTTCAAGGCAATTTGAAGGGTGTTTGGATTGTTGGGAGTTCTGGTTATCCCTTAATGGATTGGGTTTTAGTGCCCTATACTAATCAGAATCTTACTTGGACACAACATGCTTTTAATGAGAAGATTGGGGAGATTCAGAAGGTTGGTAAGGATGCCTTTGCAAGGTTGAAAGGGAGATGGTGTTGCTTGCAATCTATAAGCTCTCTAAAGACTGCTCTTAAATATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_177965.p1 GENE.R_Transcript_177965~~R_Transcript_177965.p1 ORF type:5prime_partial len:107 (-),score=26.12,DDE_Tnp_4|PF13359.2|7.5e-25 R_Transcript_177965:173-493(-)
PKGVFTDVCIGWPGSMPDDKVLEKSALYQRGVQGNLKGVWIVGSSGYPLMDWVLVPYTNQNLTWTQHAFNEKIGEIQKVGKDAFARLKGRWCCLQSISSLKTALKY*

Click here to download the sequence:
Link to NCBI Protein BLAST