Transcript Information: R_Transcript_17828.p1


Annotated TAIR IDAT5G41270.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: RNAse P, Rpr2/Rpp21 subunit (InterPro:IPR007175); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:16507797-16508813 | Forward length=258
E-Value7.3E-46
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.436483565383
Replicate 25.0303636414047
Replicate 35.965296248998
Condition 2: 8 Hour
Replicate 15.6113440504104
Replicate 26.5995658211832
Replicate 36.9959332599408
Condition 3: 24 Hour
Replicate 17.094600150228
Replicate 25.2840724425341
Replicate 36.0039189939753


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_17828.p1 GENE.R_Transcript_17828~~R_Transcript_17828.p1 ORF type:complete len:288 (+),score=62.91,Rpr2|PF04032.12|1.4e-11,Rpr2|PF04032.12|5.8e+03,Rpr2|PF04032.12|1.4e+04 R_Transcript_17828:525-1388(+)
ATGAGCAAGCGAGGAGGAGGTGCAACAACATCCTCCTCATCTGGGCTTCTTCACACTCACACACAGCTGTCTCTTAGAGAAGAAGCCAGTGGGAGAAAGCAATCCCACAATCCTAAATCCATATTGAAACTCAAGCACCTCCAGAACTTAGCTCAGCGGGCTGCTTCTGTTCCCTCTTTGGGTTCCTTCTATGGCCGCCGTTTTGCTGAGTTTGGCGAGGCTCTGGGGATTTCCCCTGACCATTCTCTCTTTCCTTGCCAGAGATGCGAAACTATTCTTCAACCTGGTTTCAACTGTAGTGTCAGAATTGAAAAAAACCGAAGCAAGAAGAGGCGACGCTGCAGCAAAATGAATTCACCCACACAAAATAATGTGGTTTACAATTGCCACTTCTGTTCGCACAGGAACCTAAAAAGAGGGAGTCCTAAAGGTTACATAAGGGAGATGGCCCCTTCAAAGACTAAAACCTTTCAGAAGCCCAAATTTGAAAATTCTACAGTGCAGAAATGTGAAGATGTGGAGAAAACCAATGTAAACAAAGTTGAAAGTTATGAGACAACTGAATCACCTTCACCTTCACCTGTAAGCAATACTGCTATCTCAATAACAGACAGTGCACCAGCACCATTGGCAAACACAGGTGCAAAATTACTGGATAGTAATAAGAGGAAAAGGAAAAAACAAGGATCAAAGGGATCAAATGATGAATCTCTGGTCAGCTCAGCCCCTGCAGATGCAGAAATGGCCAGTGGCGCCTCGAGAAAAAGGAAAAAGTCTTGGACTACTCTTAAAGAGATTGCAGCTAATGAAGAGCATGAGAGGAATCAGAGGTTTAAGAATTTTTCGATTCCATTTTTCTTGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_17828.p1 GENE.R_Transcript_17828~~R_Transcript_17828.p1 ORF type:complete len:288 (+),score=62.91,Rpr2|PF04032.12|1.4e-11,Rpr2|PF04032.12|5.8e+03,Rpr2|PF04032.12|1.4e+04 R_Transcript_17828:525-1388(+)
MSKRGGGATTSSSSGLLHTHTQLSLREEASGRKQSHNPKSILKLKHLQNLAQRAASVPSLGSFYGRRFAEFGEALGISPDHSLFPCQRCETILQPGFNCSVRIEKNRSKKRRRCSKMNSPTQNNVVYNCHFCSHRNLKRGSPKGYIREMAPSKTKTFQKPKFENSTVQKCEDVEKTNVNKVESYETTESPSPSPVSNTAISITDSAPAPLANTGAKLLDSNKRKRKKQGSKGSNDESLVSSAPADAEMASGASRKRKKSWTTLKEIAANEEHERNQRFKNFSIPFFL*

Click here to download the sequence:
Link to NCBI Protein BLAST