Transcript Information: R_Transcript_178524.p1


Annotated TAIR IDAT5G42070.1
Annotated Gene Nameunknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:16819118-16820119 | Reverse length=164
E-Value7.4E-42
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.4027242503844
Replicate 21.8991628517254
Replicate 32.0719662147274
Condition 2: 8 Hour
Replicate 12.5839354969455
Replicate 21.0112961636717
Replicate 31.3682118558081
Condition 3: 24 Hour
Replicate 12.0765855783853
Replicate 21.2191349135495
Replicate 32.0897808495028


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_178524.p1 GENE.R_Transcript_178524~~R_Transcript_178524.p1 ORF type:complete len:199 (+),score=55.26 R_Transcript_178524:13-609(+)
ATGAAGGCCCTGGTATCAGTGCCTTCATCACAATCAACCGCTTCTTTCTTATTTTCTCGCCATTGTTACAGCTACAATTCTTGCATCTTGCCATGTCAAATTTCAGTATCAAGGACCACCCACCTCAAGCAGAGACTCTCCCCTTTCATTACTCTCTCTTCTTCCTCTTCTTCAATCTCCTCTGTTGTTGAACAACAAAAACAACAACAACAACAAGAAGAAGCTGAGGATTCTTCTCTTACTTCCTCCCCTCCTTCACTTGTTGAGCCTGTTGATGTCGAGGATGAAGCTGACTCCGATGCCTATGCTGCTTCTTTCAGTGGCTGCAAGGCATGTGGTAGAGAGCAGATCGAAAGAGGCTTCAATGGTGAGGGTAGGATCCAAGGTGGGATAGCTACAATCCCAGGCTTTGGTTGGTGGCCAATCAAGGCTTATAGGCCTTGTCCCGGATTTGTCGCATCTGGAGGCAACTACAGAAGGCGTGGACAAAGCATGGACGAGGTTGCATTTGGAGGGGGCAGAGGGGCTTCTTCGTATGACTTGGATGATGCAGAAACAAGAAAGAAAGGAAAGGATAGAAGAAAATTCAAGAGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_178524.p1 GENE.R_Transcript_178524~~R_Transcript_178524.p1 ORF type:complete len:199 (+),score=55.26 R_Transcript_178524:13-609(+)
MKALVSVPSSQSTASFLFSRHCYSYNSCILPCQISVSRTTHLKQRLSPFITLSSSSSSISSVVEQQKQQQQQEEAEDSSLTSSPPSLVEPVDVEDEADSDAYAASFSGCKACGREQIERGFNGEGRIQGGIATIPGFGWWPIKAYRPCPGFVASGGNYRRRGQSMDEVAFGGGRGASSYDLDDAETRKKGKDRRKFKR*

Click here to download the sequence:
Link to NCBI Protein BLAST