Transcript Information: R_Transcript_178657.p1


Annotated TAIR IDAT1G09880.1
Annotated Gene NameRhamnogalacturonate lyase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:3208828-3211653 | Reverse length=631
E-Value6.9E-288
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.0104710616792
Replicate 20.97374146858194
Replicate 31.4939176693143
Condition 2: 8 Hour
Replicate 11.313010149345
Replicate 21.490725456079
Replicate 31.7362410158631
Condition 3: 24 Hour
Replicate 12.2957807227704
Replicate 21.5982071659839
Replicate 31.9349999795663


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_178657.p1 GENE.R_Transcript_178657~~R_Transcript_178657.p1 ORF type:complete len:690 (+),score=107.81,Rhamnogal_lyase|PF06045.7|7.4e-81,Rhamnogal_lyase|PF06045.7|7.4e+03,CBM-like|PF14683.2|2e-53,fn3_3|PF14686.2|5.1e+03,fn3_3|PF14686.2|1.4e+04,fn3_3|PF14686.2|5.7e-29,fn3_3|PF14686.2|1.6e+04 R_Transcript_178657:179-2248(+)
ATGATGGTGATGATTATGCAAGGAGCTCGATTTTGCCTCATAATTTTGGTTTTGGTTAATCTCATCAGTAAACATGATGCTTATACTAACAGGAATGTAAGAGTTGAAAAAGAATCATACTACTATAGGAGCAGCTCCCAGGAAGTGCAAGGACAATATCAAAGGGTGCAGCTTCAATACCACGATAACTATATTGTGTTGGACAACGGCATACTCCAAGTGACGTTACAAAATCCTCAGGGAAGTGTCACTAATATTCGTTACAATGGCATCACAAATTTGCTCGAAGAACTCAATGATGAAACCAATAGAGGGTACTGGGATGTTGTTTGGAAGGGAGAAGGAGTTACAAGAAAAAAGGGTAACATTGACAGGCTGGAGGGCACAGATATGAAGGTTATGGTGGAAACAGATGAGCAAGTTGAAATCTCCTTTACAAGATCATGGAACTCTTCCCTCTCTGGCAAGCTTCCCCCTTTGAACATTGACAAAAGATTCATTATGCTACGTGGCTCGTCTGGCTTTTACACTTACGCCATCTACGAACGCCCCAAAGAATTTCCTGGTTTCACTTTAGCCAACACTCGGCTTGCCTTCAAGCTAAACAAATTATGGTTTAACTATATGGCAATGGCAGATGACAGGCAAAGACAATTGCCTCTTCCTGAGGACCGCTTACCCAACAGAAGCCAACCCTTAGCTTACCCTGAAGCTGTGTTACTCACCAACCCAATTGAGCCAGAGTTCAAAGGAGAGGTTGATGACAAATACCAATACTCAGGTGAAGCCAAAGACATACAAGTACATGGATGGATTTGCAGTGATCCACCAACTGGCCTTTGGCAGATCATACCAAACAATGAGTTCCGATCTGCGGGACCAACCAAACAATACCTTACCTCACATGTGGGTCCCACATCCCTCTCGGTGCTGCTAAGTACTCACTACTCAGGTGCGGAACTAATGGCGACATTTGAAGATGGAGAGCCTTGGAAGAAAGTCCTCGGACCGCTTTTTGTGTATGCAAATTCTGTGCCAAAGGCTGATGATTGGCACCAACTTTGGGATGATGCAAAACAACAGCTGAATGTTGAATCGAAAAGCTGGCCTTACAGTTTTGCAGTTTCAGATGACTTCCCGTCATCTGATCAGCGTGGAAGCGTTAGTGGTAGCTTGCTAATCCATGAAAAGTACCTAAAGGCTATAAAGTCAGCTTCTGCAGCATTCATAGGCCTTGCTGCACCAGGTGAAGTTGGATCATGGCAAAGAGAAAGCAAGGGATATCAATTCTGGACAAGAACAGATGGTGAAGGGCATTTCATCATCAAGAATGTACGCCCTGGCAGCTACGATCTCTATGGTTGGGTTCCGGGTTTCATTGGAGATTATAAATACAATGGCACCCTTAACATAATAGCAGGACATGATGTTAAATCGGGTGAACTTGTATATGAACCTCCAAGAGATGGACCTACTCTATGGGAGATTGGAGTACCTGATCGTTCTGCTGCTGAATTCTTTGTTCCTGATCCTGATCCTAAGCTTGTTAATAAGCTTTATCTTACTCATGATAAGTATCGACAGTACGGTTTATGGGATAGGTATACTGATTTGTATCCTGATGAAGATTTAATTTACACTGTTAATATCAGTGACTACAAAAAGGATTGGTACTTTGCTCAAGTTAATAGGAAGGCAAACAATACATATGTGGGAACTACATGGCAAATTAGGTTTCAACTTGATAACATTTCCTCCAATGGAAACTATTATTTGAGATTGGCACTTGCATCTGCTACTAGTTCTCTGTTACAGGTTAGGATCAATGATCGACAACAAAAACCACCATTATTTTCAACGGAAGTGATTGGGAAGGACAATACAATTGCTAGGCATGGGGTGCATGGATTATACTGGCTTTACAATGTGAGCATACCTGGAAGCAATTTTGTTGTAGGCAACAATACCATTTTTTTGACACAAGCTATGGGAGTTAGCCCTTGGACTGGGATCTTGTATGATTATATTCGTCTTGAAAGTCCCCCTCCCTCCATTCTTAATCCGAATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_178657.p1 GENE.R_Transcript_178657~~R_Transcript_178657.p1 ORF type:complete len:690 (+),score=107.81,Rhamnogal_lyase|PF06045.7|7.4e-81,Rhamnogal_lyase|PF06045.7|7.4e+03,CBM-like|PF14683.2|2e-53,fn3_3|PF14686.2|5.1e+03,fn3_3|PF14686.2|1.4e+04,fn3_3|PF14686.2|5.7e-29,fn3_3|PF14686.2|1.6e+04 R_Transcript_178657:179-2248(+)
MMVMIMQGARFCLIILVLVNLISKHDAYTNRNVRVEKESYYYRSSSQEVQGQYQRVQLQYHDNYIVLDNGILQVTLQNPQGSVTNIRYNGITNLLEELNDETNRGYWDVVWKGEGVTRKKGNIDRLEGTDMKVMVETDEQVEISFTRSWNSSLSGKLPPLNIDKRFIMLRGSSGFYTYAIYERPKEFPGFTLANTRLAFKLNKLWFNYMAMADDRQRQLPLPEDRLPNRSQPLAYPEAVLLTNPIEPEFKGEVDDKYQYSGEAKDIQVHGWICSDPPTGLWQIIPNNEFRSAGPTKQYLTSHVGPTSLSVLLSTHYSGAELMATFEDGEPWKKVLGPLFVYANSVPKADDWHQLWDDAKQQLNVESKSWPYSFAVSDDFPSSDQRGSVSGSLLIHEKYLKAIKSASAAFIGLAAPGEVGSWQRESKGYQFWTRTDGEGHFIIKNVRPGSYDLYGWVPGFIGDYKYNGTLNIIAGHDVKSGELVYEPPRDGPTLWEIGVPDRSAAEFFVPDPDPKLVNKLYLTHDKYRQYGLWDRYTDLYPDEDLIYTVNISDYKKDWYFAQVNRKANNTYVGTTWQIRFQLDNISSNGNYYLRLALASATSSLLQVRINDRQQKPPLFSTEVIGKDNTIARHGVHGLYWLYNVSIPGSNFVVGNNTIFLTQAMGVSPWTGILYDYIRLESPPPSILNPN*

Click here to download the sequence:
Link to NCBI Protein BLAST