Transcript Information: R_Transcript_179057.p1


Annotated TAIR IDAT1G20230.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7009570-7011852 | Forward length=760
E-Value3E-157
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.29141156821757
Replicate 20.21331509856907
Replicate 30.26597082840235
Condition 2: 8 Hour
Replicate 10.35538265525755
Replicate 20.25963288059432
Replicate 30.76400102756346
Condition 3: 24 Hour
Replicate 10.49980712397034
Replicate 20.57618963719941
Replicate 30.57181231402635


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_179057.p1 GENE.R_Transcript_179057~~R_Transcript_179057.p1 ORF type:complete len:689 (+),score=124.16,PPR|PF01535.16|1.6e+03,PPR|PF01535.16|0.0011,PPR|PF01535.16|0.41,PPR|PF01535.16|0.0005,PPR|PF01535.16|2.3e+03,PPR|PF01535.16|3.3,PPR|PF01535.16|5.1e-06,PPR|PF01535.16|1.3e-05,PPR|PF01535.16|0.038,PPR|PF01535.16|4.5e-06,PPR|PF01535.16|0.083,PPR|PF01535.16|0.0037,PPR|PF01535.16|13,PPR_2|PF13041.2|8.1e+02,PPR_2|PF13041.2|0.055,PPR_2|PF13041.2|9.4e+03,PPR_2|PF13041.2|3.9,PPR_2|PF13041.2|9.3e-07,PPR_2|PF13041.2|1.3e+02,PPR_2|PF13041.2|4.8e-06,PPR_2|PF13041.2|1.3e-08,PPR_2|PF13041.2|1.8e+02,PPR_2|PF13041.2|1.2e-10,PPR_2|PF13041.2|0.53,PPR_2|PF13041.2|2.7,PPR_2|PF13041.2|1.5e+02,DYW_deaminase|PF14432.2|1.9e-39,PPR_3|PF13812.2|47,PPR_3|PF13812.2|0.029,PPR_3|PF13812.2|87,PPR_3|PF13812.2|0.04,PPR_3|PF13812.2|3.9e+03,PPR_3|PF13812.2|0.0028,PPR_3|PF13812.2|0.043,PPR_3|PF13812.2|3.2,PPR_3|PF13812.2|11,PPR_3|PF13812.2|4.2e+02,PPR_3|PF13812.2|4.6,PPR_3|PF13812.2|2.5e+03,PPR_1|PF12854.3|1.4e+02,PPR_1|PF12854.3|5.3,PPR_1|PF12854.3|4.6e+02,PPR_1|PF12854.3|36,PPR_1|PF12854.3|7.1e+02,PPR_1|PF12854.3|2.9e+02,PPR_1|PF12854.3|0.074,PPR_1|PF12854.3|0.011,PPR_1|PF12854.3|5.3e+02,PPR_1|PF12854.3|87,PPR_1|PF12854.3|0.18,PPR_1|PF12854.3|0.014 R_Transcript_179057:266-2332(+)
ATGTTTTCCAAGCTACCCACTAATTTTTCCCCTTACCTAAGCGAGAAGTTGCTTCGTACTTTTCTCAACTCCGGCGATTTAGCAAATGCCCGCCAAGTGTTTGATAAAATTCCTGAACCAAGCTTACATTCTTGGACAAACTTGATTTCTGCTTACAGAAAGCAAGGCCTGCCAAATGAAGCAATCAAGCTCTATTCTTTATTTCGGAACCAGAACACTCAGGTGCCTGATAGAGTAGTGCTTTTATCAGCTGCAAAGGCATGTGCTTTATATGCTGATCTTACCAAAGAAAAACAGATACATGAGGACGCCATTACATTTGGACTTCATCGTGATCTTGTTTTGGGCAATGCTCTGATTGATATGTTTGCAAAATGCAAATACTATGAGGGTTCTCGAAGGGTCTTCGACGAGTTGCCTATGAAGGATGTTATTTCTTGGACCTCATTGATGTCATGTTATGTAAATTGTGGGCTTCATAGGCAGGCTTTGATAACATTTTCTGAGATGGGGCTCAAAGGGTCATTGAGGCCAACTGCTGTTACTTTGTCATCGATCATCCCTGCTTGCTCTCATTCAAAGTGCTTGAATTCAGGTAGACAGATACATGGATATGTTGTGAAGAATGGCTATGGGGGGAATACATTTGTTACTAGTGCCCTTGTTGATATGTACGCAAGCTGCTCATGTCTTAAGGAGGCTCAGTTGGTATTTGACAACATGACTGTACGAGACACTGTGTCGTGGAATGTTATATTATCAGCGTATTTCTTACATGGAGAGTCTGAGAAGGCTCTCAGCTTATATGGTCAGATGAGAACACATGGGTTAGCTCTAAATTATGATTCATGGAATACTGTGATTGGTGGGTGTATGCAAAATGGATATAATACCCAAGCTCTTGAGTTACTTGTGGAAATGCAACAAAGGGGGTTCAAACCCAATCATATTTCTATCACTAGTGCTTTACCTGCATGCTCAAATTTGGAGAGCTTAAGGAAGGGAAAAGAGATTCATGGTTACATTCTTAGGAATATGATTTCTGATGACATGACTGTCACAACAGCATTGATGTACATGTATGCTAAATGTGGAGAGCTTGAAAGATCTCGTTGGATTTTTGATTCCATGCCCAGAAAGGACTATATTGCCTGGAATACAATGATTATTGCATACTCAATGCATGGGAATGGGGGAGAAGCTTTGTTGCTCTTCCAGAATATGGTAAATTGTGGGGTTAAACCCAATTCTGTTACTTTTACTGGAGTTCTGTCCGGTTGTAGTCACTCGAGGCTTGTTGATGAGGGTCTTCGGGTTTTTCATTCAATAAGTAAGGATTACTTTATTGAACCTGATGCGGATCATTATTCAAGCTTGGTTGATATGCTTAGCCGTGCTGGTCACCTTGAAGAAGCATACTCATATATTCAAAGAATGCCCATGGAACCAACTGCTGGTGCCTGGGGTGCTTTACTTGGTGCTTGTAGGGTGTATAAGAATGTAGAATTGGCTCAAATTGCCGCAAAGCATCTGTTTGAAATCGAACCTGAAAATCCTGGAAATTATATATTGTTGTCAAACATCTTTGTTGCTGCCAAACTATGGGGTGAAGCTTCTGAGATTAGAAAGCAAATGGAGGACAAGGGAATTTCGAAACCACCTGGTTGCAGTTGGATTCAGATCAGTAACAGAGTATACACCTTTGTTGTTGGTGATAAGAGAAATGAACATAGTGAAACGATCTACAAGTTCTTGAACAGTATCAGTGATAAGGTCAGAATGGCTGGTTATTTGCCCAATACTGATTTTGTTCTGCAAGATTTGGATCAAGAGGAGAAAGAGGAAGTCTTATGCAACCACAGTGAGAAGCTTGCTGTTTCTTTCGGGTTACTTAATTTGAAGGGGGAAACATCTATTCGTGTGTTTAAAAACTTGAGAATTTGTGGGGACTGTCATAATTTCATTAAATTCACAGCCAAGATTGTTGGTGTACGGATCATTGTTAGAGATTCTTTGAGATTTCACCACTTCAAGGATGGGGTTTGCTCCTGTCAAGACTTTTGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_179057.p1 GENE.R_Transcript_179057~~R_Transcript_179057.p1 ORF type:complete len:689 (+),score=124.16,PPR|PF01535.16|1.6e+03,PPR|PF01535.16|0.0011,PPR|PF01535.16|0.41,PPR|PF01535.16|0.0005,PPR|PF01535.16|2.3e+03,PPR|PF01535.16|3.3,PPR|PF01535.16|5.1e-06,PPR|PF01535.16|1.3e-05,PPR|PF01535.16|0.038,PPR|PF01535.16|4.5e-06,PPR|PF01535.16|0.083,PPR|PF01535.16|0.0037,PPR|PF01535.16|13,PPR_2|PF13041.2|8.1e+02,PPR_2|PF13041.2|0.055,PPR_2|PF13041.2|9.4e+03,PPR_2|PF13041.2|3.9,PPR_2|PF13041.2|9.3e-07,PPR_2|PF13041.2|1.3e+02,PPR_2|PF13041.2|4.8e-06,PPR_2|PF13041.2|1.3e-08,PPR_2|PF13041.2|1.8e+02,PPR_2|PF13041.2|1.2e-10,PPR_2|PF13041.2|0.53,PPR_2|PF13041.2|2.7,PPR_2|PF13041.2|1.5e+02,DYW_deaminase|PF14432.2|1.9e-39,PPR_3|PF13812.2|47,PPR_3|PF13812.2|0.029,PPR_3|PF13812.2|87,PPR_3|PF13812.2|0.04,PPR_3|PF13812.2|3.9e+03,PPR_3|PF13812.2|0.0028,PPR_3|PF13812.2|0.043,PPR_3|PF13812.2|3.2,PPR_3|PF13812.2|11,PPR_3|PF13812.2|4.2e+02,PPR_3|PF13812.2|4.6,PPR_3|PF13812.2|2.5e+03,PPR_1|PF12854.3|1.4e+02,PPR_1|PF12854.3|5.3,PPR_1|PF12854.3|4.6e+02,PPR_1|PF12854.3|36,PPR_1|PF12854.3|7.1e+02,PPR_1|PF12854.3|2.9e+02,PPR_1|PF12854.3|0.074,PPR_1|PF12854.3|0.011,PPR_1|PF12854.3|5.3e+02,PPR_1|PF12854.3|87,PPR_1|PF12854.3|0.18,PPR_1|PF12854.3|0.014 R_Transcript_179057:266-2332(+)
MFSKLPTNFSPYLSEKLLRTFLNSGDLANARQVFDKIPEPSLHSWTNLISAYRKQGLPNEAIKLYSLFRNQNTQVPDRVVLLSAAKACALYADLTKEKQIHEDAITFGLHRDLVLGNALIDMFAKCKYYEGSRRVFDELPMKDVISWTSLMSCYVNCGLHRQALITFSEMGLKGSLRPTAVTLSSIIPACSHSKCLNSGRQIHGYVVKNGYGGNTFVTSALVDMYASCSCLKEAQLVFDNMTVRDTVSWNVILSAYFLHGESEKALSLYGQMRTHGLALNYDSWNTVIGGCMQNGYNTQALELLVEMQQRGFKPNHISITSALPACSNLESLRKGKEIHGYILRNMISDDMTVTTALMYMYAKCGELERSRWIFDSMPRKDYIAWNTMIIAYSMHGNGGEALLLFQNMVNCGVKPNSVTFTGVLSGCSHSRLVDEGLRVFHSISKDYFIEPDADHYSSLVDMLSRAGHLEEAYSYIQRMPMEPTAGAWGALLGACRVYKNVELAQIAAKHLFEIEPENPGNYILLSNIFVAAKLWGEASEIRKQMEDKGISKPPGCSWIQISNRVYTFVVGDKRNEHSETIYKFLNSISDKVRMAGYLPNTDFVLQDLDQEEKEEVLCNHSEKLAVSFGLLNLKGETSIRVFKNLRICGDCHNFIKFTAKIVGVRIIVRDSLRFHHFKDGVCSCQDFW*

Click here to download the sequence:
Link to NCBI Protein BLAST