Transcript Information: R_Transcript_179818.p1


Annotated TAIR IDAT3G02330.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:473881-476592 | Reverse length=903
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.73179110356833
Replicate 20.36076117553777
Replicate 30.55102117928889
Condition 2: 8 Hour
Replicate 10.22438364212825
Replicate 20.46104911012754
Replicate 30.72772780265011
Condition 3: 24 Hour
Replicate 10.76263048064538
Replicate 20.65685765309852
Replicate 31.3037349870775


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_179818.p1 GENE.R_Transcript_179818~~R_Transcript_179818.p1 ORF type:complete len:873 (+),score=165.17,PPR_2|PF13041.2|0.048,PPR_2|PF13041.2|0.013,PPR_2|PF13041.2|1.1e-06,PPR_2|PF13041.2|3.6e+02,PPR_2|PF13041.2|1.6e-05,PPR_2|PF13041.2|46,PPR_2|PF13041.2|2.7e-05,PPR_2|PF13041.2|0.0031,PPR_2|PF13041.2|3.7e-08,PPR_2|PF13041.2|2.4,PPR_2|PF13041.2|2.6e-12,PPR_2|PF13041.2|9.1e+02,PPR_2|PF13041.2|5.3e-11,PPR_2|PF13041.2|0.045,PPR_2|PF13041.2|0.45,PPR_2|PF13041.2|9.9e+02,PPR|PF01535.16|0.16,PPR|PF01535.16|0.00043,PPR|PF01535.16|7.3e-05,PPR|PF01535.16|3.2e+03,PPR|PF01535.16|3.7,PPR|PF01535.16|2.8e-05,PPR|PF01535.16|1.4e+02,PPR|PF01535.16|5.8e-05,PPR|PF01535.16|0.0042,PPR|PF01535.16|0.42,PPR|PF01535.16|0.0013,PPR|PF01535.16|0.0028,PPR|PF01535.16|9.8e+03,PPR|PF01535.16|1.5,PPR|PF01535.16|2.9e-08,PPR|PF01535.16|0.045,PPR|PF01535.16|0.0094,PPR|PF01535.16|3.3e+02,PPR|PF01535.16|13,PPR|PF01535.16|2.4e+03,PPR_1|PF12854.3|7.7,PPR_1|PF12854.3|0.051,PPR_1|PF12854.3|0.097,PPR_1|PF12854.3|1.7e+03,PPR_1|PF12854.3|23,PPR_1|PF12854.3|61,PPR_1|PF12854.3|0.77,PPR_1|PF12854.3|28,PPR_1|PF12854.3|12,PPR_1|PF12854.3|0.0028,PPR_1|PF12854.3|4.3,PPR_1|PF12854.3|3,PPR_1|PF12854.3|85,PPR_1|PF12854.3|9.3e-05,PPR_1|PF12854.3|0.076,PPR_3|PF13812.2|5.8e+03,PPR_3|PF13812.2|0.038,PPR_3|PF13812.2|24,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|4,PPR_3|PF13812.2|54,PPR_3|PF13812.2|1.5e+02,PPR_3|PF13812.2|0.032,PPR_3|PF13812.2|91,PPR_3|PF13812.2|1.8e+03,PPR_3|PF13812.2|0.79,PPR_3|PF13812.2|13,PPR_3|PF13812.2|78,PPR_3|PF13812.2|8.2e+02,PPR_3|PF13812.2|0.0037,PPR_3|PF13812.2|0.47,PPR_3|PF13812.2|1.1,PPR_3|PF13812.2|4.8e+03,PPR_3|PF13812.2|1.2e+03,DYW_deaminase|PF14432.2|6.6e-06 R_Transcript_179818:78-2696(+)
ATGGCGGCAAACTTTTGCAATATTCCATTTAGGAAATCTTTTCCTAATTTCCGGTTATTCTCCTTCCAAATAGCATTTATCAGCACAGCTTATGCAACTGAATTAACGGGAATGCCACCCATCAAGAAGAAAACATTTTCCCACATTTTCCAAGAATGTACTCATCAAAGAGCTCTAAATCCAGGCAAACAAGCCCATGCCCAGATGATAATTTCTGGGTTCAAACCCACAATCTTTGTCACCAATTGTTTGATCCAAATGTATATAAAATGTTCCCATTTAGGATATGCCCACAAGGTGTTTGATAAAATGCCTGAACGAGATACAATCTCTTGGAACTCTCTGATTTTTGGTTATTCTGAACGAGGGAAGATGGAAACTGTGCAGCTTTTATTTGATATGATGCCTGTGAGAGATGTTGTATCTTGGAATACTTTAATTTCAAGCTACTTGCAAAATGGGTATCATCAGAAATGCATTAATATATTCCTCCATATTACTGAAATGGGTGTGTCCTTTGATCATACTACCTTAGCTATGGTGCTTAAATGCTGTTCCATTTTGAATGACTATGAAATGGGTGTGCAAGTTCATGGGATTTTGGTGAAAATGGGTTTGGAGAGTGACATGGTATCAGGAAGTGCTGTAGTTGATATGTATGCGAAATGCAAGTGTTTGGATCATTCGTTGAGGTTCTTTAATGCAATGCCAGGCAAGAATTGGGTATGTTGGAGTGCTTTCATTGCAGGTTTCGTTCAGAATGGCCGGTTTTTTGATAGTTTAGAATGGTTTAAGGAGATGCAGAGACATAGAGTTGGAGTTTGTCAGTCTACTTATGCTAGTGTGTTTAGATCCTGTGCTGCTGTATTTGCACTTAATCTAGGCAGTCAGTTGCATGCTCATGCCTTGAAGACTGGCTTTGGTACTGACAAAGTTGTAGCTACCGCTACTCTGGATATGTACGCGAAGTGTCACAAATTTGCAGACTCTAGGAAAGTGTTCAACTCTATGCCTAGTCCTAGCTTGCAGTCCTTTAATGCCATGATAATTGGGTATGTACAGAGTGAACAAGGTTTTGAAGCATTGAAGCTTTTTCAACGCATGAAGATTACTGGCCTTTGTTTTGATGAAATAAGTTTATCCGGTGTCCTTATGGCATGTGCGGTGACCAAAGAACTCTCAGCCGGTTGTCAGCTGCACGGTTTAGCCATAAAGAGTAACTTTTGGTCCAATATTTGCGTTGCAAATGCAATTTTGGACATGTATGGAAAATGTGGATCTATGAATGCTGCTCAAAATGTTTTTGATGAGATGCATGAAAGAGATGCTGTGTCTTGGAATGCAATCATAGCAGCTTACGAGCAGAATGGGTTTCAAAAGGAAACTCTATGCTTATTTGCCTCAATGCTGGCCTCTGGGATGGAACCTGATGAGTTCACGTATGGAAGCATTCTGAAAGCTTCTACTTCTAGCCAAACTTCACAAAATGGTGTGGAGATTCATGGAAGAGTTATCAAATCCGGAATGGGCATCCATTCTTTTGTGGGAAGTACATTGGTTGATATGTACTGTAAGTATGGCATGATAGATGAGGCTATGAAGCTTCATTATAGACTGGAAGAGCAGAATGTGGTTTCTTGGAATGCAATTATTTCAGGATATCTTTTGCAAGATCAGAATGAGGAAGCACAGATATTCTTTGCTTCGATGCTGGAAATGGGTGTACAACCTGATAATTTTACTTATGCAACAGTTCTTGATGCATGTGCTAACCTGGCAACTGTGGGACTTGGCAAGCAAATCCATGCTCAAATCATCAAGCATGAACTTCAATCAGATGTGTATATTGTGAGTACACTTGTTGATATGTATTCAAAGTGTGGCAATATGCAAGACTCTCAGATAATGTTTGAAAGAGCACTGAAACGGGATTTTGTGACATGGAATGCAATGATATGTGGATATGCCTATCATGGTTTTGCAGAAGAGGCTCTCAAAGTCTTTGAGGATATGAAATTGGAGAATGTGAAGCTGAATCATGCTACTTTTGTGGCAGTTCTCAGAGCTTGCGGTCACATGGGTTTGGTTGAAAAGGGCTGGGATTACTTTTGCTCAATGAGCAGCTATGGATTAGATCCACAATTGGATCACTATTCATGCATGGTGGATATGCTAGGGAAATCTGGGCAGGTTGGGAAGGCTTTGAAACTTATTGAGAATATGCCATTTAAAGCAGATGATGTTATTTGGAGAACATTGCTCAGTGTTTGCAAGATGTATGGCAATGTGGAGGTCGCAGAAAAGGCTGCCAGTTCTATCCTGCAGTTGGATCCTCAAGACTCTTCTGTCTACATTCTCCTAGCAAATATATACGCGAATGCAGGGCTGTGGAATGAGGTTTCTAGGATGAGGAGGGCAATGAGGGAAAATAAGGTGAAGAAGGAGCCAGGCTGCAGCTGGATAGAGGTGATGGGAGATGTTCACACATTCTTGGCTAATGAGAAGGCCCATCCTAGATGTACAGAGATATTCGAGGAGCTAAATTCACTATATGATGAGATGAGGTTGATCGGACATCTATCACATGGAGGCTTAACTTTTGATGTTGAAATAGGCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_179818.p1 GENE.R_Transcript_179818~~R_Transcript_179818.p1 ORF type:complete len:873 (+),score=165.17,PPR_2|PF13041.2|0.048,PPR_2|PF13041.2|0.013,PPR_2|PF13041.2|1.1e-06,PPR_2|PF13041.2|3.6e+02,PPR_2|PF13041.2|1.6e-05,PPR_2|PF13041.2|46,PPR_2|PF13041.2|2.7e-05,PPR_2|PF13041.2|0.0031,PPR_2|PF13041.2|3.7e-08,PPR_2|PF13041.2|2.4,PPR_2|PF13041.2|2.6e-12,PPR_2|PF13041.2|9.1e+02,PPR_2|PF13041.2|5.3e-11,PPR_2|PF13041.2|0.045,PPR_2|PF13041.2|0.45,PPR_2|PF13041.2|9.9e+02,PPR|PF01535.16|0.16,PPR|PF01535.16|0.00043,PPR|PF01535.16|7.3e-05,PPR|PF01535.16|3.2e+03,PPR|PF01535.16|3.7,PPR|PF01535.16|2.8e-05,PPR|PF01535.16|1.4e+02,PPR|PF01535.16|5.8e-05,PPR|PF01535.16|0.0042,PPR|PF01535.16|0.42,PPR|PF01535.16|0.0013,PPR|PF01535.16|0.0028,PPR|PF01535.16|9.8e+03,PPR|PF01535.16|1.5,PPR|PF01535.16|2.9e-08,PPR|PF01535.16|0.045,PPR|PF01535.16|0.0094,PPR|PF01535.16|3.3e+02,PPR|PF01535.16|13,PPR|PF01535.16|2.4e+03,PPR_1|PF12854.3|7.7,PPR_1|PF12854.3|0.051,PPR_1|PF12854.3|0.097,PPR_1|PF12854.3|1.7e+03,PPR_1|PF12854.3|23,PPR_1|PF12854.3|61,PPR_1|PF12854.3|0.77,PPR_1|PF12854.3|28,PPR_1|PF12854.3|12,PPR_1|PF12854.3|0.0028,PPR_1|PF12854.3|4.3,PPR_1|PF12854.3|3,PPR_1|PF12854.3|85,PPR_1|PF12854.3|9.3e-05,PPR_1|PF12854.3|0.076,PPR_3|PF13812.2|5.8e+03,PPR_3|PF13812.2|0.038,PPR_3|PF13812.2|24,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|4,PPR_3|PF13812.2|54,PPR_3|PF13812.2|1.5e+02,PPR_3|PF13812.2|0.032,PPR_3|PF13812.2|91,PPR_3|PF13812.2|1.8e+03,PPR_3|PF13812.2|0.79,PPR_3|PF13812.2|13,PPR_3|PF13812.2|78,PPR_3|PF13812.2|8.2e+02,PPR_3|PF13812.2|0.0037,PPR_3|PF13812.2|0.47,PPR_3|PF13812.2|1.1,PPR_3|PF13812.2|4.8e+03,PPR_3|PF13812.2|1.2e+03,DYW_deaminase|PF14432.2|6.6e-06 R_Transcript_179818:78-2696(+)
MAANFCNIPFRKSFPNFRLFSFQIAFISTAYATELTGMPPIKKKTFSHIFQECTHQRALNPGKQAHAQMIISGFKPTIFVTNCLIQMYIKCSHLGYAHKVFDKMPERDTISWNSLIFGYSERGKMETVQLLFDMMPVRDVVSWNTLISSYLQNGYHQKCINIFLHITEMGVSFDHTTLAMVLKCCSILNDYEMGVQVHGILVKMGLESDMVSGSAVVDMYAKCKCLDHSLRFFNAMPGKNWVCWSAFIAGFVQNGRFFDSLEWFKEMQRHRVGVCQSTYASVFRSCAAVFALNLGSQLHAHALKTGFGTDKVVATATLDMYAKCHKFADSRKVFNSMPSPSLQSFNAMIIGYVQSEQGFEALKLFQRMKITGLCFDEISLSGVLMACAVTKELSAGCQLHGLAIKSNFWSNICVANAILDMYGKCGSMNAAQNVFDEMHERDAVSWNAIIAAYEQNGFQKETLCLFASMLASGMEPDEFTYGSILKASTSSQTSQNGVEIHGRVIKSGMGIHSFVGSTLVDMYCKYGMIDEAMKLHYRLEEQNVVSWNAIISGYLLQDQNEEAQIFFASMLEMGVQPDNFTYATVLDACANLATVGLGKQIHAQIIKHELQSDVYIVSTLVDMYSKCGNMQDSQIMFERALKRDFVTWNAMICGYAYHGFAEEALKVFEDMKLENVKLNHATFVAVLRACGHMGLVEKGWDYFCSMSSYGLDPQLDHYSCMVDMLGKSGQVGKALKLIENMPFKADDVIWRTLLSVCKMYGNVEVAEKAASSILQLDPQDSSVYILLANIYANAGLWNEVSRMRRAMRENKVKKEPGCSWIEVMGDVHTFLANEKAHPRCTEIFEELNSLYDEMRLIGHLSHGGLTFDVEIG*

Click here to download the sequence:
Link to NCBI Protein BLAST