Transcript Information: R_Transcript_179827.p1


Annotated TAIR IDAT1G06270.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:1918242-1919273 | Reverse length=343
E-Value2E-126
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.4827705076947
Replicate 22.0626088570167
Replicate 32.8272799551926
Condition 2: 8 Hour
Replicate 12.9605076006745
Replicate 23.7737508396963
Replicate 34.2064185820544
Condition 3: 24 Hour
Replicate 13.7588349365259
Replicate 22.4444115646987
Replicate 34.631151621409


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_179827.p1 GENE.R_Transcript_179827~~R_Transcript_179827.p1 ORF type:5prime_partial len:397 (+),score=50.55,PPR_2|PF13041.2|3.3e-09,PPR_2|PF13041.2|0.0033,PPR_2|PF13041.2|4.4e+02,PPR_1|PF12854.3|1e+04,PPR_1|PF12854.3|3.7e-05,PPR_1|PF12854.3|0.0046 R_Transcript_179827:2-1192(+)
CCAACACCCACACCATCGGAAGGTTATCCGCAGCACCCACGCTCAGCCTTGACCGCCCAATGCCCTCCCGCCGGTCCGCACGCACAGCCCTGCACTCGACGCCCACACTGCCGCCCACACTGCAGCCGCACCACTACTCTGTTTCAGTTTGTCAATATGGCTCTAATATTAGCAGCCAAGAGTATCAGAGTTCGTCATCATTTTTGGCACCCTTTGTTCAGGGTCTCTGCCGCTTTTGCAGCTGCTCCTGCACGATTACTCGAGGAATCTGTGAAGGTGGCAGTCACCAACAAACAATATGAGCAAATCCCAGATTTTCTTACATCCTCAGAACAATCCTGCAAGTCACAAAACCCCTTCTCATTTCTTTCCTCATTCACACCAAGTCATAGAGCTCAAGTAGTTGATGAAATGTTACAGTCTTTCATTCCTATCAAACCCCATACCCGCCTTAAAATTGTTTATCAATATCTACTTACCTACACCCTTCAAAGCTCAAAACCTTTTCCACTTGCTCTTGTTACCCTTCAACGTACGCTTCGTTCGGGCTGCACCCCTGTCCCACAGACCCATTTACTCCTTTCATCTGCTTGGATTGATTATCGATCCCAATATCACTCAATACCCAGCATTCTTCTAGGCATGAAGACTATTGGGTATTGCCCAGATACTGGAACTTGCAATTTCATTATCACATCTCTTTGTGCTGTTGACCAGTTGGAGGAGGCTGTTGAAGTGTTAAGGGGGATGATTAAGGCAATGTGTATTCCTGATGTTGAGAGTTATGGTGCTGTAATAGCTGCATTCTGTACTGTCAGGAAGACTGTTAAGGCAATAACATTGATGAAGGAAATGGCAGGAAAACTTCACCTGTCGCCTAGGCAAGGAACATTAGTGAAATTAGCAGCATCTTTACGTGCAAATAAGGAGATTTGGAGAGCTGCTGAGATGATTGAGTTCTTAGAGAAAAAGGGTTTCCATGTTGGGTTTGAGTGCTATGAGCTTGTGCTAGAGGGTTGCTTGGAGTGTAAGGAGTTCATTTTGGCTGGAAAGATGGCGATGATGATGACTGAGAAAGGGTATATACCATACGTTAAGGTGAGACAGAACGTTGTTGAGGGGTTGGCTGGGGTTGGTGAGTGGCAGCTCGCCTGTGCTGTAAGGCACAAATTTGCAGAACTGAACTCCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_179827.p1 GENE.R_Transcript_179827~~R_Transcript_179827.p1 ORF type:5prime_partial len:397 (+),score=50.55,PPR_2|PF13041.2|3.3e-09,PPR_2|PF13041.2|0.0033,PPR_2|PF13041.2|4.4e+02,PPR_1|PF12854.3|1e+04,PPR_1|PF12854.3|3.7e-05,PPR_1|PF12854.3|0.0046 R_Transcript_179827:2-1192(+)
PTPTPSEGYPQHPRSALTAQCPPAGPHAQPCTRRPHCRPHCSRTTTLFQFVNMALILAAKSIRVRHHFWHPLFRVSAAFAAAPARLLEESVKVAVTNKQYEQIPDFLTSSEQSCKSQNPFSFLSSFTPSHRAQVVDEMLQSFIPIKPHTRLKIVYQYLLTYTLQSSKPFPLALVTLQRTLRSGCTPVPQTHLLLSSAWIDYRSQYHSIPSILLGMKTIGYCPDTGTCNFIITSLCAVDQLEEAVEVLRGMIKAMCIPDVESYGAVIAAFCTVRKTVKAITLMKEMAGKLHLSPRQGTLVKLAASLRANKEIWRAAEMIEFLEKKGFHVGFECYELVLEGCLECKEFILAGKMAMMMTEKGYIPYVKVRQNVVEGLAGVGEWQLACAVRHKFAELNS*

Click here to download the sequence:
Link to NCBI Protein BLAST