Transcript Information: R_Transcript_17993.p2


Annotated TAIR IDAT1G67960.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Membrane protein,Tapt1/CMV receptor (InterPro:IPR008010); Has 447 Blast hits to 428 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 190; Fungi - 133; Plants - 49; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:25480808-25484176 | Reverse length=624
E-Value2.6E-87
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.2309174500212
Replicate 20.46658445369551
Replicate 32.7997123728631
Condition 2: 8 Hour
Replicate 13.5368471590465
Replicate 23.3541322761778
Replicate 31.2101073746925
Condition 3: 24 Hour
Replicate 10.63771686743623
Replicate 22.082996672999
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_17993.p2 GENE.R_Transcript_17993~~R_Transcript_17993.p2 ORF type:3prime_partial len:180 (+),score=24.81,DUF747|PF05346.7|7.8e-50 R_Transcript_17993:1276-1812(+)
ATGTGTTGCTCAGGAATAAAAATTTCAGTATTCTTGGCTTGCAGGGTTCCTTCACTCCTGTTCTTACTTGTTCATTCTTTTATATTATTAGCTCAGGCAATTACCTTGTCAACCTGTATAGTTGCTCACAATAATGCTTTACTGGCTCTTCTGGTCTCAAATAATTTTGCGGAGATAAAAAGCAATGTGTTTAAGAGATTCAGCAAGGATAATGTCCACAGCATTGTATATTCTGATTCGATTGAGAGGTTCCATATTACAGCATTTGTGTCATTTGTTTTAGCCCAAAATATTCTGGAGGCTGAGGGTCCTTGGTTCGGAAATTTTCTTTCAAATGCTCTCCTTGTTTATTTTTCTGAAGTGGGAATTGATATCATCAAACATTCATTTATTGCGAAATTTAACGACATAAAGCCAGTGACATTCTCTGAGTTTCTTGAAGACCTTTGCAAACAGACTCTGAACATTCAGACTGATGGAGCAAAAAGAAATCTCACTTTTGTTCCTGTGGCCCCAGCATGTGTGGTCATCAGGGTG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_17993.p2 GENE.R_Transcript_17993~~R_Transcript_17993.p2 ORF type:3prime_partial len:180 (+),score=24.81,DUF747|PF05346.7|7.8e-50 R_Transcript_17993:1276-1812(+)
MCCSGIKISVFLACRVPSLLFLLVHSFILLAQAITLSTCIVAHNNALLALLVSNNFAEIKSNVFKRFSKDNVHSIVYSDSIERFHITAFVSFVLAQNILEAEGPWFGNFLSNALLVYFSEVGIDIIKHSFIAKFNDIKPVTFSEFLEDLCKQTLNIQTDGAKRNLTFVPVAPACVVIRV

Click here to download the sequence:
Link to NCBI Protein BLAST