Transcript Information: R_Transcript_180240.p2


Annotated TAIR IDAT5G18880.1
Annotated Gene NameRNA-directed DNA polymerase (reverse transcriptase)-related family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:6300535-6301422 | Reverse length=295
E-Value9E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.74807217027536
Replicate 20.17210082308441
Replicate 30.93880072115379
Condition 2: 8 Hour
Replicate 10.40140762208599
Replicate 21.0997155003862
Replicate 30.44635108082919
Condition 3: 24 Hour
Replicate 11.1290724866084
Replicate 20
Replicate 30.35881483093274


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_180240.p2 GENE.R_Transcript_180240~~R_Transcript_180240.p2 ORF type:complete len:122 (+),score=21.99,zf-RVT|PF13966.2|4.6e-09,zf-RVT|PF13966.2|5.8e+03 R_Transcript_180240:1391-1756(+)
ATGATTCAGAAGCTGATGACAAAAGAAAGAATACAGAAATGGGACCTGAACTGCGACAGGACCTGCTTGCTGTGCCGTAGGGATGAAGAGACTTGTGAGCACCTTCTGGTCCATTGTAGCTTTACCCAGCAAGTGATTAGTATTCTGATGAGTTATCTGAAAATCAATTGGAAACCTGCTGGAACATGGGAGTTAACTGTGGATGGGTGGCTTAAACTCTGCAAGGGGAAATCCCAGCAAGCACAATGCACCAAGACCATACTTGCTGAAGCTAGTTATGCTGTGTGGTGGGAGAGGAACCAGAGGTATTTTGGGCAACAAGAAAAGAGAGCTGAGCACGTGGCACAAAGTGTTTTATATATATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_180240.p2 GENE.R_Transcript_180240~~R_Transcript_180240.p2 ORF type:complete len:122 (+),score=21.99,zf-RVT|PF13966.2|4.6e-09,zf-RVT|PF13966.2|5.8e+03 R_Transcript_180240:1391-1756(+)
MIQKLMTKERIQKWDLNCDRTCLLCRRDEETCEHLLVHCSFTQQVISILMSYLKINWKPAGTWELTVDGWLKLCKGKSQQAQCTKTILAEASYAVWWERNQRYFGQQEKRAEHVAQSVLYI*

Click here to download the sequence:
Link to NCBI Protein BLAST