Transcript Information: R_Transcript_18059.p1


Annotated TAIR IDAT1G04080.3
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)PRP39
Annotation TypeOrtholog
Chromosome Positionchr1:1051803-1056550 | Forward length=823
E-Value1.6E-154
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 123.736796829359
Replicate 210.178177560295
Replicate 317.687060088756
Condition 2: 8 Hour
Replicate 117.200520514465
Replicate 219.991731805762
Replicate 328.873969869295
Condition 3: 24 Hour
Replicate 128.155801316996
Replicate 218.91822642138
Replicate 330.337819994176


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_18059.p1 GENE.R_Transcript_18059~~R_Transcript_18059.p1 ORF type:3prime_partial len:689 (+),score=174.09,TPR_14|PF13428.2|3.4,TPR_14|PF13428.2|30,TPR_14|PF13428.2|6.6e+03,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|0.81,TPR_14|PF13428.2|6.3,TPR_14|PF13428.2|6.4e+02,TPR_14|PF13428.2|25,TPR_14|PF13428.2|1.8e+02,Suf|PF05843.10|5.7e+03,Suf|PF05843.10|47,Suf|PF05843.10|0.0024,Suf|PF05843.10|0.5,Suf|PF05843.10|56 R_Transcript_18059:338-2401(+)
ATGGGTGAGAGTGAGGCAGTAGTTGCTCAATCATCTACTGTTGTGGGCTATACGTCTGCAGGTTATCATTCTGGTGATTATAATATGGACGGTAACCCAAATGCTACCAATGCTGCTGAAGTTGCTGCAACAAGTACTGTGCCTGCTGGAGATTCAGCTGATGCCATGTCTGTAGCAGTTCAGAGCAGTAATTCTGATGCTGGAGCTCCACAGATTGATAAAAGTTCTGCTGCCCCAGACGGTCCTGTTGCTTCCAATGAGGAAACTAGGCCTCCTGTTACAGGAGAAGACAGTAACCAGGCTACCGCAGGAGGTGAAAGCACATCTGTGGAATCGAGTCAAGCAGCTGTTTATGATGCTAGTGCAAATGGAATTGTTAGTGATGCAAATGGCAATATTACTACTTCTCATGATGCACAAGCCACAACCACTGAGCAACAGTTTGAGGATGGTGCAGTGTTATCTGCTGAAGAAGAGCGTTTATGGAGCATTGTAAAAGCAAATTCTTTAGACTTCAATGCATGGACATCATTAATTGAAGAGACAGAGAAGACGTCACAGGACAATATTTTGAAAATTAGGAAAGTATATGATGCCTTTTTAGCAGAGTTCCCTTTGTGTTATGGTTATTGGAAGAAATATGCTGATCATGAAGCTCGTTTTGGAGCTATTGACAAAGTTGTAGAGGTCTATGAGCGAGCAGTTCAAGGGGTCACATATTCTGTGGATATCTGGTTGCATTACTGTGGGTTTGCTATTAACACATATGGAGACCCAGACACTATAAGAAGGCTGTTCGAGCGTGCATTGGCATATGTTGGAACAGATTACCTGTCTAATACCCTCTGGGATAAGTACATTGAATATGAATACACACAGCAGGAATGGGGACGTCTTGCCATGATATATACAAGGATATTAGAAAATCCTATTCAGCAGTTTGATCGTTATTTTAATAGTTTCAAGGAGCTAGCTGGAAGTCAACCCCTGGCAACACTAAGAACTGCCGAAGAAGCAGCTGCAGCTGCTGCACCTGCTGCCGGCTCGGATGCAGACGGCCAAGTACCTGAAAAGGAGGTTAATTCTGATGCGATGAACGAATCGTCTAACTCTGTAAGTACTGGTTTGTCAGAAGCAGAAGAGTTGGAGAAGTATATCGCCGTTAGAGAAGAGATGTATACGAGAGCTAAGGAGTTCGAATCTAAGATCAGTGGTTTTGAAACAGCCATTAGACGGCCATACTTCCATGTACGGCCCTTGAATGACTCAGAGCTAGAAAATTGGCATAGCTACCTGGATTTCATTGAAAGCGACGGGGACTTCAACAAGATTGTCAAGCTATACGAAAGATGCCTAGTAGCATGTGCTAACTATCCTGAGTTCTGGATAAGATACATCTTATGCATGGAAGCAAGTGGGAGCAGTGAACTTGCTGAAAATGCTCTTGCGCGTGCTACCCGAGTATTTGTAAAGAGGCAACCTGAGATCCACCTTTTTGCTGCTCGCTACAAAGAGCAGCATGAAGATATTTCTGGAGCTCGTGCTGCTTATCAGCTTGTACATACTGAGATTTCTCCTGGGCTTCTTGAGGCTATCATTGATCATGCAAATATGGAAAGGCGGCTGGGAAGCGTGGAAGATGCTTTCTCTTTATATGAACAAGCTATTGCCATAGAAAAAGGGAAAGAGCAATCACAGACACTACCAATGCTGTTTGCCCAATATTCTCGGTTTGTATACCTGGCCTGTGGAAATGCAGAAAAGGCTCGTGATATTCTTGTTGGAGCGCTTGAGCATGTCCAGCTTTCAAAGCCTCTTCTGGAGGCTCTAATTCATCTAGAATCTATCCAATCCCTTCCTAAGCGAATTGAGTATATAGATTCTTTAATTGAGAAGTTCATTAATCTGGAGGCTGATAATTCTGATGCTGCCAGTATTCTTGATAGAGAAGAATTATCAAGCATCTATTTGGAGTTTTTGGGCCTTTTTGGTGATGTGCAATCAATAAAGAAGGCTAAGGATCGGCATGCTAGACTGTTCTTGCGTCACAAGAGTGCATCTGAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_18059.p1 GENE.R_Transcript_18059~~R_Transcript_18059.p1 ORF type:3prime_partial len:689 (+),score=174.09,TPR_14|PF13428.2|3.4,TPR_14|PF13428.2|30,TPR_14|PF13428.2|6.6e+03,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|0.81,TPR_14|PF13428.2|6.3,TPR_14|PF13428.2|6.4e+02,TPR_14|PF13428.2|25,TPR_14|PF13428.2|1.8e+02,Suf|PF05843.10|5.7e+03,Suf|PF05843.10|47,Suf|PF05843.10|0.0024,Suf|PF05843.10|0.5,Suf|PF05843.10|56 R_Transcript_18059:338-2401(+)
MGESEAVVAQSSTVVGYTSAGYHSGDYNMDGNPNATNAAEVAATSTVPAGDSADAMSVAVQSSNSDAGAPQIDKSSAAPDGPVASNEETRPPVTGEDSNQATAGGESTSVESSQAAVYDASANGIVSDANGNITTSHDAQATTTEQQFEDGAVLSAEEERLWSIVKANSLDFNAWTSLIEETEKTSQDNILKIRKVYDAFLAEFPLCYGYWKKYADHEARFGAIDKVVEVYERAVQGVTYSVDIWLHYCGFAINTYGDPDTIRRLFERALAYVGTDYLSNTLWDKYIEYEYTQQEWGRLAMIYTRILENPIQQFDRYFNSFKELAGSQPLATLRTAEEAAAAAAPAAGSDADGQVPEKEVNSDAMNESSNSVSTGLSEAEELEKYIAVREEMYTRAKEFESKISGFETAIRRPYFHVRPLNDSELENWHSYLDFIESDGDFNKIVKLYERCLVACANYPEFWIRYILCMEASGSSELAENALARATRVFVKRQPEIHLFAARYKEQHEDISGARAAYQLVHTEISPGLLEAIIDHANMERRLGSVEDAFSLYEQAIAIEKGKEQSQTLPMLFAQYSRFVYLACGNAEKARDILVGALEHVQLSKPLLEALIHLESIQSLPKRIEYIDSLIEKFINLEADNSDAASILDREELSSIYLEFLGLFGDVQSIKKAKDRHARLFLRHKSASE

Click here to download the sequence:
Link to NCBI Protein BLAST