Transcript Information: R_Transcript_181002.p1


Annotated TAIR IDAT5G14080.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:4543265-4545256 | Reverse length=634
E-Value1.2E-214
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.58966981057829
Replicate 20.1541578591505
Replicate 30.1681845638484
Condition 2: 8 Hour
Replicate 10.57529198113939
Replicate 20.19701217481221
Replicate 30.63970433904447
Condition 3: 24 Hour
Replicate 10.53939047818394
Replicate 20.55057180784114
Replicate 30.86779445895188


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_181002.p1 GENE.R_Transcript_181002~~R_Transcript_181002.p1 ORF type:5prime_partial len:681 (+),score=100.95,PPR_2|PF13041.2|15,PPR_2|PF13041.2|1e+03,PPR_2|PF13041.2|2.5e-05,PPR_2|PF13041.2|8e-05,PPR_2|PF13041.2|0.88,PPR_2|PF13041.2|2.9e-09,PPR_2|PF13041.2|1.6e-10,PPR_2|PF13041.2|8.9e-12,PPR_2|PF13041.2|7e+03,PPR_1|PF12854.3|2.3e+03,PPR_1|PF12854.3|0.00036,PPR_1|PF12854.3|0.037,PPR_1|PF12854.3|7.1e+03,PPR_1|PF12854.3|0.22,PPR_1|PF12854.3|7.7e-05,PPR_1|PF12854.3|0.00098,PPR_1|PF12854.3|2.5e-07,PPR_1|PF12854.3|1.1e+03,PPR_1|PF12854.3|4.2e+03,PPR|PF01535.16|1.1e+03,PPR|PF01535.16|6.3e+03,PPR|PF01535.16|3.6e-05,PPR|PF01535.16|1.9,PPR|PF01535.16|8.1e+03,PPR|PF01535.16|9.4e+02,PPR|PF01535.16|5.5e-05,PPR|PF01535.16|0.0075,PPR|PF01535.16|0.00046,PPR|PF01535.16|0.018,PPR|PF01535.16|8.2e+03,PPR_3|PF13812.2|3.3e+03,PPR_3|PF13812.2|2.9e+02,PPR_3|PF13812.2|2.1,PPR_3|PF13812.2|2.9e+02,PPR_3|PF13812.2|1.3,PPR_3|PF13812.2|4e+02,PPR_3|PF13812.2|2.3e-05,PPR_3|PF13812.2|17,PPR_3|PF13812.2|9e+02,PPR_3|PF13812.2|1e+03 R_Transcript_181002:1-2043(+)
CAGTTACTCTCTTCCCGGGCATTTCCTCTGTGTTTGCAACCACACTCTCGCATGAGACCTCCGGTGAACCAATCAGCGACCTTCATAAGCCGAGCTCTAATCTCAGCTTCAACCACCTCGAAACAGACCGGGTCATGGACTCAGTCACTCGAACAAACCCTTCACCAACTCGGTTGCCGTGACTCTCTAACCCCATCACTAGTAGCCCAAGTCATTGACCCTCATCTTCTTCACTACCCCTCTCTTTCTCTTGGTTTCTTCAACTGGGCATCCCAACAACCCAATTTCTCTCACTGCTCCATTTCCTACCACTCTGTGCTCAAATCCCTTTCCATTTCCCGCCAATTCAACCCCTTGGAGAAGCTCCTTAGAGAGGCCAAATCTCGAAACATTGCCATTGATCCTTCCTTTTACCGATATGTGATTCGGTCTCGTATCAAGTCGAAGAGAACCCATGAAGCTTTCTTGCTTCTGAATGAAGGTTTCTCGTCGATTTCTGATGTGGGTTTCAATGTTTGTAACTCCCTCCTTGCTGGGTTGGTGTCTGAGGGGCGCGTCGATTGTGCACGCAAGTTGTTCGACGAAATGCTTGTGAGAGGTGTGAGTTTGGGTACTCTTGGATTTGGGTTGTTTATGTGGAGGTTCTGTACGACCGTTCAATTGTGTCAAGTGTTGGGTGTGTTGGATAAAGTTAGGGAAGGTGTTTGTGGGTTCAATGGGTCGATAGTTGCCCTTCTGATAGTTCATGGGCTATGCGAAGTGGGGAGAGTGTCTGAAGCGTATGGCGCGTTGGAGGAGTTGAGGAACCGCAGTTGTAAGCCTGATTTTATGGCCTATAGGATTGTCGCGGAGGCTTTTAGGTCGAAGGGACCAGGGTGTATTTTCGAGGTGCAAATGGTGTTGAAGAAGAAAAGGAAGTTGGGAGTGGCTCCTAGGGCTAGTGACTATAAAGAGTTCATACTTGCCTTGATTGCGGAAAATCTACTTTTTGAAGCCAAAAAGTTGGGGCAAGTGATCGTTGAAGGGGATTTTTCTGTTGAAGATGATGTTTTGAATGCTTTGATAGGGTCAGTAGTGATGGTTGATCCATGTTCAGCTATGATGTTTTTCAAGTTCATGGTAGGAAAAGAAAGAAGGCCAACTCTACTTGCCTTAAGTAATTTGAGTAGATACCTCTACAAACATGATAAAGCTGATGATATGTTGGAAGTTTTCGAGACACTGTCTTCTAAGGACTATTTTACAAACTTAGAGAGCTACGGTGTTATGTTTTCATCATTGTGCATGTCTGGTAGAGTAAGAGAATCTTATGGGGTTCTTCAGGAGATGAGGAAGAAAGGTCTGAATCCTGATACCTCGTTTTATAATGTTCTTATGGAAGCCTTATGCAATGAAGATCTTCTCCGTCCTGCAAAGAAGCTTTGGGATGAAATGTTTGCCTATGGTGTCAAAGGGAACTTGAAGACTTATAACATTCTTATTAAGAAGCTTGCAGAGACAGGTCTTCTTGATGATTCACAGCAACTTTTTCATCACATGTTACAGAAAGGCATAATGCCTGATGCAGCTACGTATACTTCTCTTCTCGAAGGTCTCTGTCAAGACTCAAAAATTGAAGCTGCAATCCAAGTTTTTTACAAGGCCACTGATCAGGATACGAGAGTAGCACATACTTTAATCAATCCATTGGTTCTATTCCTATGTAAAGGAGGTCATTTCCTGTCTGCTTCTAGATTCTTGTGCAGTAATTGTCATCTGGGACATCCAGAGTCCCATGCTATTTTGTTGAAATATCTGGCTGAATCTAAAGACGTTCAAACTCCCATCAACCACCTGAAACAGGTCATGGCTGTTTCACCTTCTCTGCTGCAACAGATATGTACCGAAATTTTTTCACTGCTTTCCTCGTCTCCGAATCCAGAGCCAATTCTACAGTTGCTTCGAGAGATGCAACACAATGAATCCACTTCCATGAATGATACTTGGAGAGATTTTTGTGGGCAGTTCTTGAAATGGGTTTCAGGAGCTAATCATACTTCATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_181002.p1 GENE.R_Transcript_181002~~R_Transcript_181002.p1 ORF type:5prime_partial len:681 (+),score=100.95,PPR_2|PF13041.2|15,PPR_2|PF13041.2|1e+03,PPR_2|PF13041.2|2.5e-05,PPR_2|PF13041.2|8e-05,PPR_2|PF13041.2|0.88,PPR_2|PF13041.2|2.9e-09,PPR_2|PF13041.2|1.6e-10,PPR_2|PF13041.2|8.9e-12,PPR_2|PF13041.2|7e+03,PPR_1|PF12854.3|2.3e+03,PPR_1|PF12854.3|0.00036,PPR_1|PF12854.3|0.037,PPR_1|PF12854.3|7.1e+03,PPR_1|PF12854.3|0.22,PPR_1|PF12854.3|7.7e-05,PPR_1|PF12854.3|0.00098,PPR_1|PF12854.3|2.5e-07,PPR_1|PF12854.3|1.1e+03,PPR_1|PF12854.3|4.2e+03,PPR|PF01535.16|1.1e+03,PPR|PF01535.16|6.3e+03,PPR|PF01535.16|3.6e-05,PPR|PF01535.16|1.9,PPR|PF01535.16|8.1e+03,PPR|PF01535.16|9.4e+02,PPR|PF01535.16|5.5e-05,PPR|PF01535.16|0.0075,PPR|PF01535.16|0.00046,PPR|PF01535.16|0.018,PPR|PF01535.16|8.2e+03,PPR_3|PF13812.2|3.3e+03,PPR_3|PF13812.2|2.9e+02,PPR_3|PF13812.2|2.1,PPR_3|PF13812.2|2.9e+02,PPR_3|PF13812.2|1.3,PPR_3|PF13812.2|4e+02,PPR_3|PF13812.2|2.3e-05,PPR_3|PF13812.2|17,PPR_3|PF13812.2|9e+02,PPR_3|PF13812.2|1e+03 R_Transcript_181002:1-2043(+)
QLLSSRAFPLCLQPHSRMRPPVNQSATFISRALISASTTSKQTGSWTQSLEQTLHQLGCRDSLTPSLVAQVIDPHLLHYPSLSLGFFNWASQQPNFSHCSISYHSVLKSLSISRQFNPLEKLLREAKSRNIAIDPSFYRYVIRSRIKSKRTHEAFLLLNEGFSSISDVGFNVCNSLLAGLVSEGRVDCARKLFDEMLVRGVSLGTLGFGLFMWRFCTTVQLCQVLGVLDKVREGVCGFNGSIVALLIVHGLCEVGRVSEAYGALEELRNRSCKPDFMAYRIVAEAFRSKGPGCIFEVQMVLKKKRKLGVAPRASDYKEFILALIAENLLFEAKKLGQVIVEGDFSVEDDVLNALIGSVVMVDPCSAMMFFKFMVGKERRPTLLALSNLSRYLYKHDKADDMLEVFETLSSKDYFTNLESYGVMFSSLCMSGRVRESYGVLQEMRKKGLNPDTSFYNVLMEALCNEDLLRPAKKLWDEMFAYGVKGNLKTYNILIKKLAETGLLDDSQQLFHHMLQKGIMPDAATYTSLLEGLCQDSKIEAAIQVFYKATDQDTRVAHTLINPLVLFLCKGGHFLSASRFLCSNCHLGHPESHAILLKYLAESKDVQTPINHLKQVMAVSPSLLQQICTEIFSLLSSSPNPEPILQLLREMQHNESTSMNDTWRDFCGQFLKWVSGANHTS*

Click here to download the sequence:
Link to NCBI Protein BLAST