Transcript Information: R_Transcript_181178.p1


Annotated TAIR IDAT4G21540.1
Annotated Gene Namesphingosine kinase 1
Annotated Gene Symbol(s)SPHK1
Annotation TypeOrtholog
Chromosome Positionchr4:11459609-11462356 | Forward length=485
E-Value2.3E-194
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 118.141208132547
Replicate 214.825959069468
Replicate 318.41888696507
Condition 2: 8 Hour
Replicate 116.540451627629
Replicate 217.158554229155
Replicate 318.410919343535
Condition 3: 24 Hour
Replicate 117.663455764989
Replicate 217.689217844892
Replicate 318.314201880873


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_181178.p1 GENE.R_Transcript_181178~~R_Transcript_181178.p1 ORF type:complete len:490 (+),score=69.79,DAGK_cat|PF00781.20|7.7e+03,DAGK_cat|PF00781.20|6.2e-27 R_Transcript_181178:223-1692(+)
ATGGATCAAATTGGCGGAGAATCACAAATTCTAGTCTCCGAAAACGTACTAATCAACGGTTCATTCATTCCGTTAATCCTCCACTCCGACGGCACCCTCCGTTGGCTCGACAAATGTTTGACCTTAGAAAAAGAAGCTCTCGGAGTTTACCTAGAAGGTTCTACAATCATTATTAAATGCGCCATCCAGAAAACTGGTGCTGGTATCATCTGTTGCTCCGCTCAGGATACCACCATCAGACGCACCTTCGTTTTCCAGCCTCCCTCTGAGAACTCTCTACAGAATTGGTTCCAGAAGCTTCGTCAATTCCTCGATTCTCTCGATCGACCGAAAAGGCTGTTTGTGTTGGTGAACCCTTACGGTGGCAAGAGAACGGCGTTGGAGATATTTTATAACACCGTCCAGCCTTTGCTTGATGATGCTGATATTCAATTCAATTTGCAAGAAACTAAATATCGGCTTCATGCAAAGGAGCTTGTTTATAAACTGGATCTAAACAAGTATGACGGCATTGTTTGTGTTAGTGGTGATGGTATCTTGGTCGAGGTGGTGAATGGCTTGCTGCAAAGAGACGATTGGGAAGCTGCAATCAAGATGCCTCTCGGTGTGATTCTAGGAGGTACTAGCAATGGTATGGTGAAGTCCCTTTTAGATGCTGTTGATCAACCTTGTTCTGCATTTAATGCTACTCTTGCAATTATCCGAGGGCATAAACGCTCACTTGATGTTGCTACTGTTGCACAAGGGAAAACAAAGTCTTTTAGTGTTTTGATGCTTGCATGGGCTCTTGTTGCAGACATAGACATTGAATCAGAGAAATGGAGGTGGATGGGAAGTGCTCGTATTGATTTATATGCTATCAACAGAATATTTAACTTGAGGAAGTATAGTGGTCGTATTCATTTTGTCCCTGCACCTGGATATGAGGATTACGTTGAGAAAATCAGTCAAAAAGTTATATCAGTCCAGGACTTGCCATTCTGCAGTTCTAGTGACATGCAGAGTGGTGTGCAAGAAAAAGGTTATCCAGGACCTAACATTGACTTAGATAAGATGAACTGGAGGACCATGGAAGGACCTTTTGTTTCAGTTTGGATCCATAATGTACCCTGGGGTGGTGAAGGTCAAATGCCAGCTCCTGATGCTAAGTTTTCAGATGGTTGTTTAGATGTAATTCTTATGAGAGATTGCTCAAAATTGGGTCTGCTGTCGTTAATGACGGAACTGGGCAATGGGAGACATGTCAAATCACCATGTGTCTCATACTTTAAGGTCCGAGCCTTTGTGTTGGAGCCTGGTCCACTTATCAAAGATAAAACAAGAGGAGGAATCATAGACTGTGACGGGGAGGTCTTGGCTAGAGGTAATCGTACATATAAGTGTGATCAAAAGTCCTTGATGTCATATGAAAGTCTTCAAATAACCATCGATCAAGGTCTAGCTACTCTTTTCTCCCCTCCGATTTACTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_181178.p1 GENE.R_Transcript_181178~~R_Transcript_181178.p1 ORF type:complete len:490 (+),score=69.79,DAGK_cat|PF00781.20|7.7e+03,DAGK_cat|PF00781.20|6.2e-27 R_Transcript_181178:223-1692(+)
MDQIGGESQILVSENVLINGSFIPLILHSDGTLRWLDKCLTLEKEALGVYLEGSTIIIKCAIQKTGAGIICCSAQDTTIRRTFVFQPPSENSLQNWFQKLRQFLDSLDRPKRLFVLVNPYGGKRTALEIFYNTVQPLLDDADIQFNLQETKYRLHAKELVYKLDLNKYDGIVCVSGDGILVEVVNGLLQRDDWEAAIKMPLGVILGGTSNGMVKSLLDAVDQPCSAFNATLAIIRGHKRSLDVATVAQGKTKSFSVLMLAWALVADIDIESEKWRWMGSARIDLYAINRIFNLRKYSGRIHFVPAPGYEDYVEKISQKVISVQDLPFCSSSDMQSGVQEKGYPGPNIDLDKMNWRTMEGPFVSVWIHNVPWGGEGQMPAPDAKFSDGCLDVILMRDCSKLGLLSLMTELGNGRHVKSPCVSYFKVRAFVLEPGPLIKDKTRGGIIDCDGEVLARGNRTYKCDQKSLMSYESLQITIDQGLATLFSPPIY*

Click here to download the sequence:
Link to NCBI Protein BLAST