Transcript Information: R_Transcript_181403.p1


Annotated TAIR IDAT5G39980.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:16001036-16003072 | Reverse length=678
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.5015353115654
Replicate 21.9604979304375
Replicate 32.4493650140464
Condition 2: 8 Hour
Replicate 11.8806914342011
Replicate 22.3236458539786
Replicate 33.1163909800062
Condition 3: 24 Hour
Replicate 13.215476012314
Replicate 22.4247498479099
Replicate 33.3952312993229


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_181403.p1 GENE.R_Transcript_181403~~R_Transcript_181403.p1 ORF type:complete len:664 (+),score=130.07,PPR_2|PF13041.2|9.4e-11,PPR_2|PF13041.2|0.11,PPR_2|PF13041.2|0.12,PPR_2|PF13041.2|2.4e-14,PPR_2|PF13041.2|5.9e-10,PPR_2|PF13041.2|7.8e-09,PPR_2|PF13041.2|6.3e-13,PPR_2|PF13041.2|2.2e-14,PPR_2|PF13041.2|5.3e-08,PPR_2|PF13041.2|6.4,PPR_2|PF13041.2|3.1e+02,PPR_2|PF13041.2|0.16,PPR_2|PF13041.2|0.0069,PPR_2|PF13041.2|1.2e+03,PPR_2|PF13041.2|21,PPR|PF01535.16|0.12,PPR|PF01535.16|0.00014,PPR|PF01535.16|0.85,PPR|PF01535.16|1.2e-07,PPR|PF01535.16|9e-05,PPR|PF01535.16|7.5e-05,PPR|PF01535.16|5.2e-05,PPR|PF01535.16|2.9e-06,PPR|PF01535.16|0.00021,PPR|PF01535.16|0.21,PPR|PF01535.16|4.6,PPR|PF01535.16|0.0084,PPR|PF01535.16|0.0066,PPR|PF01535.16|4.5,PPR|PF01535.16|38,PPR_1|PF12854.3|84,PPR_1|PF12854.3|0.00053,PPR_1|PF12854.3|7.3e-07,PPR_1|PF12854.3|3.2e-05,PPR_1|PF12854.3|1.6e+02,PPR_1|PF12854.3|1.6e-05,PPR_1|PF12854.3|0.0077,PPR_1|PF12854.3|8.8e-07,PPR_1|PF12854.3|0.098,PPR_1|PF12854.3|2.5,PPR_1|PF12854.3|1.3e+03,PPR_1|PF12854.3|95,PPR_3|PF13812.2|3.8,PPR_3|PF13812.2|0.1,PPR_3|PF13812.2|3.7,PPR_3|PF13812.2|4.9e-05,PPR_3|PF13812.2|0.04,PPR_3|PF13812.2|1.5e+03,PPR_3|PF13812.2|0.63,PPR_3|PF13812.2|0.0003,PPR_3|PF13812.2|0.048,PPR_3|PF13812.2|2.1e+02,PPR_3|PF13812.2|17,PPR_3|PF13812.2|1.6e+02,PPR_3|PF13812.2|2.3,PPR_3|PF13812.2|66,PPR_3|PF13812.2|3.9e+03,Clathrin|PF00637.16|3.2e+03,Clathrin|PF00637.16|2.6e+02,Clathrin|PF00637.16|32,Clathrin|PF00637.16|2.4,Clathrin|PF00637.16|1.3e+03,Clathrin|PF00637.16|0.057,ECSIT|PF06239.7|3.2,ECSIT|PF06239.7|3.4e+02,ECSIT|PF06239.7|8.6,ECSIT|PF06239.7|30,ECSIT|PF06239.7|1.5e+02,ECSIT|PF06239.7|8.5,TPR_12|PF13424.2|13,TPR_12|PF13424.2|3.9,TPR_12|PF13424.2|1e+03,TPR_12|PF13424.2|7.8e+02,TPR_12|PF13424.2|69,TPR_12|PF13424.2|94,TPR_12|PF13424.2|8.3e+03 R_Transcript_181403:156-2147(+)
ATGATTGATACTAGTCTCTTCTTAAAGGTGGAAAGTTCTTCTGTTCTTGCAATCACACCCTTCCAAAGAATTCCCAATAGAATTCCTCATTACCCTCTCTCAAAAATCTCAGCTTCATATTCCAAAGACATATGGACCAACCCATCATCATTAATATCATCAACCCACCAACGGCATCGCAGAAACCAGCTTCAAAGAAGCACTACAACAACTACATACTTAGACCACAGCATAGACATGGAAAACCTGCTAAAATCAATTGCCCAAACAGCCAATGAACAAGAACTCTTTGCCCTTTTATCCCCATACAAAGACAGGCAACTTTCAGTTCGTTTCATGGTATCCCTCCTTTCTCGCGAACCCGACTGGCAAAGATCACTTGCCTTGCTTGATTGGATTAATGAGGTTGCTATTTATTCCCCATCTGTGTTTGTTTACAATGTGGTTATTCGTAATGTACTTCGAGCCAAGCAGTGGATTGTTGCACACGGCCTGTTCGATGAAATGCGCCAAAGAGCTTTGGCTCCTGACAGGTATACTTACTCTATGCTCATTACCCAGTTTGGGAAAGAGGGTATGTTTGATTCTGCCTTGTCTTGGTTGCAAAAGATGGAACATGATCGAGTTTCGGGTGATCTTGTTTTGTACAGTAATTTGATTGAGTTGTCTAGGAAGTTGTGTGATTATACTAAGGCAATATCTTTGTTCTCTAGGCTGAAGAGGTCTGGCATTAGGCCTGACCTTGTTGCTTATAACACCATGATTAATGTGTTTGGGAAAGCTAAGCTCTTTCGTGAGGCGAGGCACTTGGTGAAAGAGATGAGGGAAAATGGTGTTGAACCAGATACTGTTAGTTACTCTACTCTTTTGAATATGTATGTGGAGAATCACAAGTTTGTTGAGGCATTGTCATTGTTTTCTGAGATGAATAAGACCAAATGTGGGCTTGATCTTACTACTTGTAATATTATGCTTGATGTTTATGGGCAGCTTGATATGGCTAAAGAGGCTGATAGGCTTTTTTGGAGCATGAGGAAGATGGGTATTGACCCTAATGTAGTTAGTTATAATACCCTTTTGAGGGTATATGGAGAAGCTGAGCTTTTTGGGGAAGCTATACATCTTTTTCGGTTGATGCAGAAGAAGGACATTGAACAAAATGTTATTACTTACAATACTATGATTAAGATATATGGGAAGTCTCTTGAGCATGAGAAAGCTGGAAACTTGGTGCAAGAGATGCAGAAAAGAGGAATTCAACCTAATGCAATTACATACTCGACGATAATTTCTATATGGAGTAGGGCAGGGAAGTTGGACCGTGCAGCGATGCTGTTTCAAAAGCTTAGGAGTTCTGGGGTTGAGATTGATCAAGTTCTGTATCAAACTATGATAGTCGCTTATGAGAGAGCAGGTTTAGTAGCTCATGCAAAGAGGTTGCTCCATGAGCTTAGGTGCCCTGACAATATCCCCCATGACACTGCCATTGCTATTCTTGCAAGAGCAGGCCGAATAGAAGAAGCCACATGGGTTTTCAGACAGGCATTTGATGCTGGGGAAGTGAAGGATATCTCCGTTTTCCAGTGTATGATTGAACTCTACTCAAGACACAGGAAATATACAAATGTCATAGAAGTCTTCGAGAAGATGAGAGGAGCAGGATATTTCCCAACTTCAAATGTCATTGCTCTTTCTCTGAACGCCTATGGAAAGGTTAGGGAGTTTGAGAGGGCTGATATGGTGTATCGAGAGATGCAAGAAGAGGGGTGTATTTTCCCTGATGAAGTCCATTTCCAGATGTTAAGTCTGTATGGTTCAAGAGGTGACTTCAAGGCTGTGGAATCACTGTTTGAAAAGCTGGATTCAGATCCCAATGTAAACAAGAAGGAGCTTCATCTTGTTGTTTCAAACATATATGAAGGAGCAAATAGACTCAATGATGCCGCTAAAGTCATCAACAAGATGTCTGAGAAAGGTATTTTGAGATATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_181403.p1 GENE.R_Transcript_181403~~R_Transcript_181403.p1 ORF type:complete len:664 (+),score=130.07,PPR_2|PF13041.2|9.4e-11,PPR_2|PF13041.2|0.11,PPR_2|PF13041.2|0.12,PPR_2|PF13041.2|2.4e-14,PPR_2|PF13041.2|5.9e-10,PPR_2|PF13041.2|7.8e-09,PPR_2|PF13041.2|6.3e-13,PPR_2|PF13041.2|2.2e-14,PPR_2|PF13041.2|5.3e-08,PPR_2|PF13041.2|6.4,PPR_2|PF13041.2|3.1e+02,PPR_2|PF13041.2|0.16,PPR_2|PF13041.2|0.0069,PPR_2|PF13041.2|1.2e+03,PPR_2|PF13041.2|21,PPR|PF01535.16|0.12,PPR|PF01535.16|0.00014,PPR|PF01535.16|0.85,PPR|PF01535.16|1.2e-07,PPR|PF01535.16|9e-05,PPR|PF01535.16|7.5e-05,PPR|PF01535.16|5.2e-05,PPR|PF01535.16|2.9e-06,PPR|PF01535.16|0.00021,PPR|PF01535.16|0.21,PPR|PF01535.16|4.6,PPR|PF01535.16|0.0084,PPR|PF01535.16|0.0066,PPR|PF01535.16|4.5,PPR|PF01535.16|38,PPR_1|PF12854.3|84,PPR_1|PF12854.3|0.00053,PPR_1|PF12854.3|7.3e-07,PPR_1|PF12854.3|3.2e-05,PPR_1|PF12854.3|1.6e+02,PPR_1|PF12854.3|1.6e-05,PPR_1|PF12854.3|0.0077,PPR_1|PF12854.3|8.8e-07,PPR_1|PF12854.3|0.098,PPR_1|PF12854.3|2.5,PPR_1|PF12854.3|1.3e+03,PPR_1|PF12854.3|95,PPR_3|PF13812.2|3.8,PPR_3|PF13812.2|0.1,PPR_3|PF13812.2|3.7,PPR_3|PF13812.2|4.9e-05,PPR_3|PF13812.2|0.04,PPR_3|PF13812.2|1.5e+03,PPR_3|PF13812.2|0.63,PPR_3|PF13812.2|0.0003,PPR_3|PF13812.2|0.048,PPR_3|PF13812.2|2.1e+02,PPR_3|PF13812.2|17,PPR_3|PF13812.2|1.6e+02,PPR_3|PF13812.2|2.3,PPR_3|PF13812.2|66,PPR_3|PF13812.2|3.9e+03,Clathrin|PF00637.16|3.2e+03,Clathrin|PF00637.16|2.6e+02,Clathrin|PF00637.16|32,Clathrin|PF00637.16|2.4,Clathrin|PF00637.16|1.3e+03,Clathrin|PF00637.16|0.057,ECSIT|PF06239.7|3.2,ECSIT|PF06239.7|3.4e+02,ECSIT|PF06239.7|8.6,ECSIT|PF06239.7|30,ECSIT|PF06239.7|1.5e+02,ECSIT|PF06239.7|8.5,TPR_12|PF13424.2|13,TPR_12|PF13424.2|3.9,TPR_12|PF13424.2|1e+03,TPR_12|PF13424.2|7.8e+02,TPR_12|PF13424.2|69,TPR_12|PF13424.2|94,TPR_12|PF13424.2|8.3e+03 R_Transcript_181403:156-2147(+)
MIDTSLFLKVESSSVLAITPFQRIPNRIPHYPLSKISASYSKDIWTNPSSLISSTHQRHRRNQLQRSTTTTTYLDHSIDMENLLKSIAQTANEQELFALLSPYKDRQLSVRFMVSLLSREPDWQRSLALLDWINEVAIYSPSVFVYNVVIRNVLRAKQWIVAHGLFDEMRQRALAPDRYTYSMLITQFGKEGMFDSALSWLQKMEHDRVSGDLVLYSNLIELSRKLCDYTKAISLFSRLKRSGIRPDLVAYNTMINVFGKAKLFREARHLVKEMRENGVEPDTVSYSTLLNMYVENHKFVEALSLFSEMNKTKCGLDLTTCNIMLDVYGQLDMAKEADRLFWSMRKMGIDPNVVSYNTLLRVYGEAELFGEAIHLFRLMQKKDIEQNVITYNTMIKIYGKSLEHEKAGNLVQEMQKRGIQPNAITYSTIISIWSRAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELRCPDNIPHDTAIAILARAGRIEEATWVFRQAFDAGEVKDISVFQCMIELYSRHRKYTNVIEVFEKMRGAGYFPTSNVIALSLNAYGKVREFERADMVYREMQEEGCIFPDEVHFQMLSLYGSRGDFKAVESLFEKLDSDPNVNKKELHLVVSNIYEGANRLNDAAKVINKMSEKGILRY*

Click here to download the sequence:
Link to NCBI Protein BLAST