Transcript Information: R_Transcript_181747.p1


Annotated TAIR IDAT5G39510.1
Annotated Gene NameVesicle transport v-SNARE family protein
Annotated Gene Symbol(s)VTI11, ATVTI1A, ATVTI11, ZIG, SGR4, VTI1A, ZIG1
Annotation TypeOrtholog
Chromosome Positionchr5:15822035-15823591 | Forward length=221
E-Value3.4E-109
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 191.429989940605
Replicate 282.275095748933
Replicate 395.772966239117
Condition 2: 8 Hour
Replicate 170.687700616934
Replicate 294.300189484095
Replicate 394.125546474948
Condition 3: 24 Hour
Replicate 184.351762302696
Replicate 276.943912238168
Replicate 378.043037526132


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_181747.p1 GENE.R_Transcript_181747~~R_Transcript_181747.p1 ORF type:complete len:221 (+),score=48.71,V-SNARE|PF05008.11|2.3e-24,V-SNARE|PF05008.11|7.1e+03,V-SNARE_C|PF12352.4|9.8e+02,V-SNARE_C|PF12352.4|2.5e+03,V-SNARE_C|PF12352.4|9e-23,Sec20|PF03908.9|9.5e+02,Sec20|PF03908.9|3.6e-07 R_Transcript_181747:868-1530(+)
ATGAGTCAAGTATTTGATACGTACGAACGTCAATATTGCGAGCTTTCGGCGAATTTGACTCGGAAATGTACCTCTGCTGGTCTTCTCAATGGAGAGCAGAAGAAGCAAAAAATATCTGAAATTAAAGCCGGTTTGGATGATGCAGAAGCTCTGATTCGGAAAATGGACCTAGAGGCTAGAACATTACAGCCAAACGTGAAGGCCATGGTTCTTGCCAAACTGAGAGAGTACAAGAATGACCTGAACAACCTGAAAGCTGAGGTTAAAAGATTATCGACAACTGATAGCCAGGCTGCTCGAGATGCATTGCTGGAATCTGGAATGGCTGATGCATTGATGGCTTCTGCTGATCAAAGAGGGCGCTTATTGATGTCAACGGAGAGGTTGAACCATTCCACTGACAGAATCAAGGAAAGCAGAAGAACAATGCTAGAGACCGAGGAGCTTGGTGTTTCTATACTGCAAGATTTGCATCAGCAACGCCAGTCCCTCCTACATGCTCATAACACACTTCATGGGGTTGATGAGAACATTGGCAGAAGCAGGAAAATATTGACTGCAATGTCTAGGAGGATGAACCGGAATAAATGGATTATTGGCTCTATTATTGCAGTCCTGGTCCTTGCGGTTCTTTTGATCCTTTACTTCAAGTTACGTCATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_181747.p1 GENE.R_Transcript_181747~~R_Transcript_181747.p1 ORF type:complete len:221 (+),score=48.71,V-SNARE|PF05008.11|2.3e-24,V-SNARE|PF05008.11|7.1e+03,V-SNARE_C|PF12352.4|9.8e+02,V-SNARE_C|PF12352.4|2.5e+03,V-SNARE_C|PF12352.4|9e-23,Sec20|PF03908.9|9.5e+02,Sec20|PF03908.9|3.6e-07 R_Transcript_181747:868-1530(+)
MSQVFDTYERQYCELSANLTRKCTSAGLLNGEQKKQKISEIKAGLDDAEALIRKMDLEARTLQPNVKAMVLAKLREYKNDLNNLKAEVKRLSTTDSQAARDALLESGMADALMASADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDENIGRSRKILTAMSRRMNRNKWIIGSIIAVLVLAVLLILYFKLRH*

Click here to download the sequence:
Link to NCBI Protein BLAST