Transcript Information: R_Transcript_182233.p1


Annotated TAIR IDAT5G46460.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:18840305-18842398 | Forward length=697
E-Value2.1E-208
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0577046910847
Replicate 20.31285878103755
Replicate 30.56887593367928
Condition 2: 8 Hour
Replicate 10.97294827604948
Replicate 20.62936256837774
Replicate 31.5026167732108
Condition 3: 24 Hour
Replicate 10.9502403653851
Replicate 20.91288323222588
Replicate 31.7756581616854


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_182233.p1 GENE.R_Transcript_182233~~R_Transcript_182233.p1 ORF type:complete len:604 (+),score=80.93,PPR_2|PF13041.2|0.00097,PPR_2|PF13041.2|1.6e-06,PPR_2|PF13041.2|1.4e-05,PPR_2|PF13041.2|1.6e-09,PPR_2|PF13041.2|5.5e-13,PPR_2|PF13041.2|1.5e+03,PPR_2|PF13041.2|1.7e-11,PPR_2|PF13041.2|2.6,PPR_2|PF13041.2|1.3e-06,PPR_2|PF13041.2|0.27,PPR_2|PF13041.2|17,PPR|PF01535.16|0.0093,PPR|PF01535.16|2.5e-07,PPR|PF01535.16|3.8e-06,PPR|PF01535.16|1.5e-08,PPR|PF01535.16|0.0004,PPR|PF01535.16|70,PPR|PF01535.16|56,PPR|PF01535.16|1.4e-06,PPR|PF01535.16|7.7e+02,PPR|PF01535.16|0.25,PPR|PF01535.16|0.00066,PPR|PF01535.16|0.094,PPR|PF01535.16|2e+02,PPR|PF01535.16|0.46,PPR_1|PF12854.3|0.0026,PPR_1|PF12854.3|0.00065,PPR_1|PF12854.3|2.8e-07,PPR_1|PF12854.3|3.7e-10,PPR_1|PF12854.3|0.00038,PPR_1|PF12854.3|4.1,PPR_1|PF12854.3|1.4,PPR_1|PF12854.3|98,PPR_1|PF12854.3|63,PPR_1|PF12854.3|12,PPR_1|PF12854.3|15,PPR_1|PF12854.3|0.026,PPR_1|PF12854.3|1.3e+03,PPR_3|PF13812.2|0.47,PPR_3|PF13812.2|0.0085,PPR_3|PF13812.2|0.02,PPR_3|PF13812.2|0.00055,PPR_3|PF13812.2|2.4,PPR_3|PF13812.2|1.1,PPR_3|PF13812.2|2.7e+02,PPR_3|PF13812.2|0.0017,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|21,PPR_3|PF13812.2|1.8e+02,PPR_3|PF13812.2|3.6,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|1.6 R_Transcript_182233:82-1893(+)
ATGCCAAGAGTTCCGGCCATTATTCCACCTTGTCTCAGGCTTTCTTCCGAATTTCTATCAAATCCCATTCACCCCTTCATTTTTCAGGAACCAAAGACTACCCTTTTCAAGGGGCCATATATATTGTCCCAAAAAACTCATTTTTACTCTTCAATTTCTCTCCACATAAGAAACGTAGTCTTAGACAAAGCCCATCATATTTTTGAGAAAATCCCAACTCCAAATGTGCATGTATGTACCAAAATTATCACTGCTTATGCCAAAAACTATAGACTCCAAGATGCACTCCAAGTGTTCGATAAAATGCTTGTGAGAGATACAGTTACATGGAATTCAATGATTAAAGGGTGTTTAGATTGTGGGGATTTAATAACAGCTAGGAAGCTCTTTGATAGGATGCCTGAGAGAAATGTCATTGCTTGGACTACAATGATTAATGGGTACATGAAATTTGGGAAGGTAGATGTTGCTCAAGAATTGTTTAGGGTTATGCCTGTTAAGGATATTGCAGCTTGGAATTGTATGATTTTTGGGTATTGTACTAATGGTAGAGTTGATGAGGCTTTCAAGGTTTTTGAACAAATGCCATGTAGGAATGTAATCTCATGGACGTCGATGATTAGTGGGCTTGATCAAAATGAGAGGAGTAATGATGCCTTAAGACTGTTCCAAGAGATGGTTGGATATGGTGTTGAGCCAACTATAAGCACCTTTTCCTGTCTTATATCAGCTTGTGCCAAAGTACCGGCATTGGAGCTGGGTATGCAGATTCATGCTCGAGTCATGAAGCTGGGGCTTGGTTGGGATGAATTCGTAGCTTTGTCGTTAATAACATTGTATGCCAATTGCAAGCAATTAGAAAATTCTTGCAAGGTTTTTAGTGAGAAGGTGCATAATAGTGTGGTTGTATGGACTTCCCTCTTGACAGGGTTCAGTTCGAACTTGAAGCATGAGGGTGCATTGGAAGTTTTTAGTGAGATGATCCGAAGGGGTATTTTCCCTAATGAATCATCTTTCACCAGTGCCTTGAACTCTTGTTGTGCATTATTGTCTATAGATAGAGGAAAGATGATTCATGCAGAAGCTATCAAGGCAGGACATGAGGCTTATGCTTTTGTGGGCAATTCACTGATCACCTTTTATTCTAAATGTGGAGTCATTCGAGATGCAGTGAAGACATTTGAAGGCATAAAAGAGAAAAATCTCGTCTCTTGGAATTCAATTATTGTTGGATGTGCTCAATGTGGGTGTGGTATGTGGGCACTCACTCTCTTTACCCAGATGCTATGTCTTGGGGTAGAACCTGACGAAATTACTTTCACTGGGTTGCTCTATGCTTCTAATAATTCTCGAATGTATCCAAAAGGAAGGCGTTTCTTTCAATATTTCAGTAAGTACACGTCGATAAAAATGAGCCTTCAGCACTATGCATGTATGGTGGATATCATCTGTCGTAGTGGGAACCTAGATGAAGCCGAAGATTTTATCATGAAGATGCCAATAAAGGCAAATTCGCTTGTGTGGTTAACTCTGCTTAATGCATGTACCATGAACTCTAATTTTGAAATAGCGGAAAGAGCTTCAAAGTTTATCCTTGATCTAGACCCACAGTGTAGTGCAGCTTACACTCTATTGTCTAATATTTATGCATCAGCTGGTAGATGGGATGATGTCTCAAGGATAAGATCAGATATGAAAATGAGAGATGTTGCAAAGCAGCAAGGACATAGCTGGTTGACTCCAAAGGGAGAAAGACATGAAACAAACCCAATCAGTCGACAGGACAATTGGATCGGCTTGAGTGAAGCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_182233.p1 GENE.R_Transcript_182233~~R_Transcript_182233.p1 ORF type:complete len:604 (+),score=80.93,PPR_2|PF13041.2|0.00097,PPR_2|PF13041.2|1.6e-06,PPR_2|PF13041.2|1.4e-05,PPR_2|PF13041.2|1.6e-09,PPR_2|PF13041.2|5.5e-13,PPR_2|PF13041.2|1.5e+03,PPR_2|PF13041.2|1.7e-11,PPR_2|PF13041.2|2.6,PPR_2|PF13041.2|1.3e-06,PPR_2|PF13041.2|0.27,PPR_2|PF13041.2|17,PPR|PF01535.16|0.0093,PPR|PF01535.16|2.5e-07,PPR|PF01535.16|3.8e-06,PPR|PF01535.16|1.5e-08,PPR|PF01535.16|0.0004,PPR|PF01535.16|70,PPR|PF01535.16|56,PPR|PF01535.16|1.4e-06,PPR|PF01535.16|7.7e+02,PPR|PF01535.16|0.25,PPR|PF01535.16|0.00066,PPR|PF01535.16|0.094,PPR|PF01535.16|2e+02,PPR|PF01535.16|0.46,PPR_1|PF12854.3|0.0026,PPR_1|PF12854.3|0.00065,PPR_1|PF12854.3|2.8e-07,PPR_1|PF12854.3|3.7e-10,PPR_1|PF12854.3|0.00038,PPR_1|PF12854.3|4.1,PPR_1|PF12854.3|1.4,PPR_1|PF12854.3|98,PPR_1|PF12854.3|63,PPR_1|PF12854.3|12,PPR_1|PF12854.3|15,PPR_1|PF12854.3|0.026,PPR_1|PF12854.3|1.3e+03,PPR_3|PF13812.2|0.47,PPR_3|PF13812.2|0.0085,PPR_3|PF13812.2|0.02,PPR_3|PF13812.2|0.00055,PPR_3|PF13812.2|2.4,PPR_3|PF13812.2|1.1,PPR_3|PF13812.2|2.7e+02,PPR_3|PF13812.2|0.0017,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|21,PPR_3|PF13812.2|1.8e+02,PPR_3|PF13812.2|3.6,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|1.6 R_Transcript_182233:82-1893(+)
MPRVPAIIPPCLRLSSEFLSNPIHPFIFQEPKTTLFKGPYILSQKTHFYSSISLHIRNVVLDKAHHIFEKIPTPNVHVCTKIITAYAKNYRLQDALQVFDKMLVRDTVTWNSMIKGCLDCGDLITARKLFDRMPERNVIAWTTMINGYMKFGKVDVAQELFRVMPVKDIAAWNCMIFGYCTNGRVDEAFKVFEQMPCRNVISWTSMISGLDQNERSNDALRLFQEMVGYGVEPTISTFSCLISACAKVPALELGMQIHARVMKLGLGWDEFVALSLITLYANCKQLENSCKVFSEKVHNSVVVWTSLLTGFSSNLKHEGALEVFSEMIRRGIFPNESSFTSALNSCCALLSIDRGKMIHAEAIKAGHEAYAFVGNSLITFYSKCGVIRDAVKTFEGIKEKNLVSWNSIIVGCAQCGCGMWALTLFTQMLCLGVEPDEITFTGLLYASNNSRMYPKGRRFFQYFSKYTSIKMSLQHYACMVDIICRSGNLDEAEDFIMKMPIKANSLVWLTLLNACTMNSNFEIAERASKFILDLDPQCSAAYTLLSNIYASAGRWDDVSRIRSDMKMRDVAKQQGHSWLTPKGERHETNPISRQDNWIGLSEA*

Click here to download the sequence:
Link to NCBI Protein BLAST