Transcript Information: R_Transcript_18226.p1


Annotated TAIR IDAT5G66750.1
Annotated Gene Namechromatin remodeling 1
Annotated Gene Symbol(s)DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1
Annotation TypeOrtholog
Chromosome Positionchr5:26649050-26652869 | Forward length=764
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 131.092314067224
Replicate 217.441808613539
Replicate 324.199375019557
Condition 2: 8 Hour
Replicate 119.312342300911
Replicate 217.020093789879
Replicate 323.773369290218
Condition 3: 24 Hour
Replicate 137.811086707045
Replicate 226.802060016633
Replicate 332.659212898953


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_18226.p1 GENE.R_Transcript_18226~~R_Transcript_18226.p1 ORF type:complete len:762 (+),score=186.68,SNF2_N|PF00176.19|6e+02,SNF2_N|PF00176.19|2.2e-61,Helicase_C|PF00271.27|3.4e+03,Helicase_C|PF00271.27|1.7e-20,ResIII|PF04851.11|2.2e+03,ResIII|PF04851.11|8.2e-07,ResIII|PF04851.11|4.5e+03,HDA2-3|PF11496.4|1.1e-06 R_Transcript_18226:153-2438(+)
ATGGCGGAAGAGAACGGGACTAAAGCTGATCCTTCCATTGACTCTCCTACTTCCGTTCTTGAAGAAGAGGACACTGTTAAAGAGGTGGCCGAGATCAAGTCGGAGGATGATTTACTTGGTGATGCCAAAAATGGAGATTCTACTCTTATCTCAGAAGGAATGGCGGAAGAAGAGAAGAAGTTGCTTGAAGCTAGAGTGAAGGAAGAAGATGCAGAGAAGGAGAAGGTTCCAGAGGATGCAGCCCATTTGAACGACGTTCAGTTCTCTAAACTGGATGAGCTCTTAACACAAACTCAACTCTATTCGGAGTTCCTGTTGGAAAAGATGGATGACATTACACTCAATGGAGCGGAGGAGGAACAGCAAGAAGAATCCAGTAAGGAGACAAAAAAAGGACGGGGTAGAAAAAGAAAAGCACAGTATAATGATAGGAAAGCAAAGAGAGCAGTTGCAGCAATGCTGACCAGATCTCGTGAGGGCACAGCCGCTGAAGATGCTGACTTAACCGAGGAGGAAAGAGTTGCAAAGGAGCAATCTGAATTGATACCTCTCTTGACCGGTGGGAAGTTAAAATCGTATCAGCTAAAAGGAATTAAGTGGCTGATTTCTCTGTGGCAGAATGGTCTTAATGGAATCCTTGCTGATCAAATGGGACTTGGCAAGACTATTCAGACCATAGGGTTTTTGGCTCATCTAAAAGGAAAGGGGTTGGATGGGCCTTACATGGTCATTGCTCCACTGTCTACTCTCTCAAATTGGATGAATGAAATAGCTAGGTTTACTCCATCAGTGAAAGCAATTATTTATCACGGGGACAGGAAACAGAGAAATGAGATAAGGCTGAAACATATGCCAAAGACTATTGGTCCAAAGTTTCCAATCATTATTACATCTTATGAGGTTGCTCTTAATGATGCCAGGAGATATTTGAGGCATTACAAGTGGAAATATGTTGTGGTTGATGAGGGTCACCGTCTGAAAAATTCAAAGTGCAAATTGTTCAAAGAGTTGAAGCTTTTGCCCATTGAAAACAAGCTTCTGTTGACTGGGACACCGCTGCAGAATAACTTGGCAGAATTGTGGTCATTGTTGAATTTCATTTTGCCCGACATATTCTCCTCTCACGAGGAATTTGAATCCTGGTTTGATCTGTCTGGAAAGTGTGTTAGTGAAGATGTGAAGGAGGATATGGAAGAAAAAAGGCGGATTCAAGTAGTGGCCAAGCTCCATGCTATACTGCGTCCACTCCTCCTGCGGAGAATGAAGGCAGATGTTGAACAGATGCTGCCTCGCAAAAAGGAGATCATTTTATATGCAACTATGACTGAGCATCAAAGGAACTTTCAGGATCACCTAATCAATAAAACTTTGGAAAATCATCTGCTGGATACTGTTAGTTGTGGTGGCCGTGCAACACATGGAATGAAAGGAAAGCTAAACAATTTAATGATTCAACTGCGCAAAAACTGCAATCATCCAGATTTACTGGAGTCTGCTTTTGATGGATCGTTCTTCTATCCACCTGTGGAACAAATAGTCGGACAGTGTGGTAAATTCCATTTGCTAGATAGGTTGTTGACTCAACTTCTGGACCGGAAACATAAAGTTCTGATATTCTCTCAGTGGACCAAAATTCTGGACATAATGGATTATTACTTTAGTGAGAATGGTTTTGAAGTTTGCAGAATTGATGGCAGTGTGAAACTTGATGAAAGGAGGAGACAGATAAATGAGTTTAATGATGTAAACAGCAACTATAGAATTTTTCTTCTGAGCACAAGGGCAGGAGGCTTGGGCATAAACCTTACTTCTGCTGACACCTGTATATTATATGACAGTGACTGGAATCCCCAAATGGATCTGCAGGCTATGGATCGCTGTCATAGGATTGGACAAACTAAGCCTGTTCATGTTTATAGGCTTGCCACTGCACAATCTATTGAGGGCCGTATTCTGAAAAGAGCCTTTAGTAAGCTGAAGCTTGAGCATGTTGTCATTGGCAAAGGGCAATTTAAACAAGAGAGGACTAAGAATGATGATATGGAGGAAGAAGATCTGCTGGCACTGCTCCGTGAGGAAGAGGATGCAGAAGATAAGATGATCCAGACAGACATCAGTGATGAGGATCTCGAGAAAATCATGGACCGTAGTGATTTGATTGGCACTGCAGATGAGGATGATGAAAGTTCGAATGCTGAGAAATTTGTGCTTCCACTTAAAGGGCCTGGCTGGGAGGTGGTCGTGCCTAATGCAAGCGGAGGAGTGTTGTCCACCTTGAACAGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_18226.p1 GENE.R_Transcript_18226~~R_Transcript_18226.p1 ORF type:complete len:762 (+),score=186.68,SNF2_N|PF00176.19|6e+02,SNF2_N|PF00176.19|2.2e-61,Helicase_C|PF00271.27|3.4e+03,Helicase_C|PF00271.27|1.7e-20,ResIII|PF04851.11|2.2e+03,ResIII|PF04851.11|8.2e-07,ResIII|PF04851.11|4.5e+03,HDA2-3|PF11496.4|1.1e-06 R_Transcript_18226:153-2438(+)
MAEENGTKADPSIDSPTSVLEEEDTVKEVAEIKSEDDLLGDAKNGDSTLISEGMAEEEKKLLEARVKEEDAEKEKVPEDAAHLNDVQFSKLDELLTQTQLYSEFLLEKMDDITLNGAEEEQQEESSKETKKGRGRKRKAQYNDRKAKRAVAAMLTRSREGTAAEDADLTEEERVAKEQSELIPLLTGGKLKSYQLKGIKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYMVIAPLSTLSNWMNEIARFTPSVKAIIYHGDRKQRNEIRLKHMPKTIGPKFPIIITSYEVALNDARRYLRHYKWKYVVVDEGHRLKNSKCKLFKELKLLPIENKLLLTGTPLQNNLAELWSLLNFILPDIFSSHEEFESWFDLSGKCVSEDVKEDMEEKRRIQVVAKLHAILRPLLLRRMKADVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLLDTVSCGGRATHGMKGKLNNLMIQLRKNCNHPDLLESAFDGSFFYPPVEQIVGQCGKFHLLDRLLTQLLDRKHKVLIFSQWTKILDIMDYYFSENGFEVCRIDGSVKLDERRRQINEFNDVNSNYRIFLLSTRAGGLGINLTSADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSIEGRILKRAFSKLKLEHVVIGKGQFKQERTKNDDMEEEDLLALLREEEDAEDKMIQTDISDEDLEKIMDRSDLIGTADEDDESSNAEKFVLPLKGPGWEVVVPNASGGVLSTLNS*

Click here to download the sequence:
Link to NCBI Protein BLAST