Transcript Information: R_Transcript_18232.p1


Annotated TAIR IDAT2G47680.1
Annotated Gene Namezinc finger (CCCH type) helicase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:19545828-19550871 | Reverse length=1015
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 119.961452046947
Replicate 212.072371395044
Replicate 315.227401496583
Condition 2: 8 Hour
Replicate 115.692469321491
Replicate 217.192464070826
Replicate 322.104396887291
Condition 3: 24 Hour
Replicate 118.725852313715
Replicate 213.081485932233
Replicate 318.542878755757


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_18232.p1 GENE.R_Transcript_18232~~R_Transcript_18232.p1 ORF type:complete len:1047 (+),score=166.31,Helicase_C|PF00271.27|3.5e-13,zf-CCCH|PF00642.20|0.00029,zf-CCCH|PF00642.20|0.004,DEAD|PF00270.25|9.2e-06,DEAD|PF00270.25|8.8e+03 R_Transcript_18232:85-3141(+)
ATGGGGGAGCCTCCGTCATCGCCTACACCATCTTCCTGCTCGTCGTCGTTCTCTTCTTCTTCGCCATTCTCGTCGTTGCCGATCATGGCGTTGCGAGAGAAAATTGTCGATAAAATTAGGGAGAATCGTGTTACTCTCATCGTTGGCGAAACTGGTTGCGGGAAAAGCTCACAAGTTCCTATGTTTCTGCGGGAAGCAAACATGACCCCTGTTCTATGTACTCAGCCTCGAAGATTTGCTGTTGTAGCTGTTTCTAAAATGGTAGCAAAAGCCCTGCAATGTGAAGTGGGAGAAGAAGTCGGCTACCACATTGGTCACTCTAAGGTCCTATCGTCCAGCTCAAAGATTATCTTTAAAACTGCTGGTGTTCTGCTAGAGGAAATGCGAGACAAGGGGAGGAATGCGCTCAACTACAAGGCTATCATCCTAGATGAAGTGCATGAGAGATCTGTGGAATCTGATCTCGTTCTTGTCTGTGTAAAGCAGTTTCTTCTGAGACATAAGGATATAAGGCTGGTGTTGATGTCTGCAACTGCTGATATTTCTAGATACAGGGATTACTTTAAGGATCTTGAAAGAGGTGAGAGAGTGGAAGTCCTTGCTATTCCTAGCTCAAGTCAACACTCCAATTTTCAGCGTAAAGTCCTGTATCTTGAACAGGTCACTGAGCTTCTTGGGGAGAGTTCAGATTCAACAGACTCATTATCTGTTAAATACTGTTATGGTACATCACCATCCATGGCAAAGGCTGATATTAAGCGTGATGTCCACAAGCTTATTCATGAACTTGTATTGCATATACATAACAATGAGCCTGACATTACAAAAAGCATTTTGATTTTTCTTCCGACATACTATTCACTTGAGCAACAATGGCTCCTTTTAAAGCCTCTCAGTTCGTCTTTCAAGGTTCATATTTTACACAGCAGTGTGGATACAGAGCAAGCTTTAATGGCTATGAAGATATGGAAGTCCCATCGTAAGGTGATATTAGCCACCAATATTGCAGAATCATCTGTGACTATTCCTGAAGTTGCACATGTAATTGATTCTTGCCGTTCTTTACAAGTATATTGGGATGAGAACAGGAAAAGGGATACTGCTGAGCTTGTTTGGGCTTCTAAATCTCAGGCGGAGCAACGTAAAGGAAGAACTGGTCGAACATGCGATGGCCAGATCTACCGGTTGGTTACAGGATCATTTTTCTCTAAGCTTCCAGAATTCGAATCTCCTGCAATTCTCAAGTTATCATTGAGATTACAAGTGCTTCTTATCTGCTGTGCTGAATCAAAATCAATCAATGACCCCAAAGTTTTGTTGCAAAAGGCTTTGGACTCACCTGATCCCGAGATTATAGAGGATGCTCTGAGCTTACTTGTGCACATCAAGGCCCTTAAGAGAGGGCATGTAAGAGGTCGATATGAGCCGACATTCTATGGAAGATTGTTAGCAACTTTGTCCTTGTCATTTGATGCTTCCGTGCTCATTCTGAAATTTGGTGCTATTGGAATGCTACGTGAGGGCATTTTACTGGGAATAATAATGGACATGCAGCCACCACCCATTGTTCGCCCCTTTGGCCAGGATAATTTGTTTACGGAATATACAGATTCCTACTATGCTGTGGGGGAAGCGAATCCTTCTCTGATTGGTAGGAAGGAGGAGATCTTCTTGGCAAATCTGTGTGCTTACCAATTTTGGCAACGCATATATAAGGATAACCTTCGCCTCCAGCGTTTGAAGCAGCTTTTGGATGTCGATGAGATAAAAGCTCCGCAAGCATTGCTCTCCAAAATCGAAGAAGAGTGGTGCTCCTTTCATAACCTATTGCAGTCGTCTATGCATCAAATCTCTGAAATATATGATGACATTCTGTGTTCATTGCATCGTTATCGGCCGAAATTTCTTGCCACATCTTCTGACTGTCCATCCTACTACCATCCTTACGAGTTTAGGCATACGTGTTTTCTAGAGTGTCCGCCCAGTAACGATGCTGTTGAGGCTGATGAGCAAAATGAAACCAAAAAGTGTGTCACAGTACCTTTTGTAGCCTCTCACCACTTTCAAGTTCAAAGTGTGGCAGAGAAGTTTGCAAATATTATTAAAGAGATCAGAGTTGAGCACACAAAAGAATCGACTGATGATCATCATCAATATGCCGATGAGGAGGGGGCATTTCTTAATGAGGAAGTCTCATTGTGTAGGTATTTTGTCAAAGGGCTCTGTAATAGGGGTGGTGATTGCATATTTTCCCATTCACTGCTAGCTCAACGCCCTGTATGCAAATTCTTTGCCTCTTTCCAGGGTTGTCGAAATGGAGATTCATGTTTCTTTTCTCATGATCTTGGTCCACATGTTCTGTCTCCTGGGAAAGATTTTTGTGTTCCAGAAGATGAAGATGCTGATGTTGATGGTCTGGTTAAACTATTTCCCACTTCTTCCGATGGTAGCATATTGCTGTTAGACGATACAGATTTACATTTTTCAACAAAGTTTTCTCAGCATTATGATCCATCAAAAATTGTTTCCACAACACCGTTGTCAGAGACATCTATATTTGATCCATCACTGTCCAATGTTAAAATTCTGTGGGGCATCGCTTCACCTTTTCAAATTTTTACCTTCGGAGCAGTTGAAACTCGTATTACTTGGGACGCAGTGAGGTGTGTCTTCTGGTTTCCAAATTTTGATAGTTGTGATGAAGATCCAGAAAGACAAAGGTGTCTTGTGCAGAATTTCTTCGAGCATTTAGCAATCCGTATGCTGGCTGACACATTGTTCGATATGCATGTGATTCTTATCATGAACAATATTAGGTTCTCACAACTGCAGGTGGAGAAGTTGGGTAGAGATTGCTTCTTCCTACTGTCAAAGTCACTTCCATTCAGTGAAACAAGCTTCGGCTTGTTGCCAGATGCTGTCAATACCAAAAAGCCTTTAATGGTATCGAGACCCATTACGTATGTATTTAGCTTGCATCCACCTTCTGATCTGCAGTTTGGAAATTACACTGCTGCCCTAATCGATGGTCTGCATGGTATCCGGTCTAAGGAGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_18232.p1 GENE.R_Transcript_18232~~R_Transcript_18232.p1 ORF type:complete len:1047 (+),score=166.31,Helicase_C|PF00271.27|3.5e-13,zf-CCCH|PF00642.20|0.00029,zf-CCCH|PF00642.20|0.004,DEAD|PF00270.25|9.2e-06,DEAD|PF00270.25|8.8e+03 R_Transcript_18232:85-3141(+)
MGEPPSSPTPSSCSSSFSSSSPFSSLPIMALREKIVDKIRENRVTLIVGETGCGKSSQVPMFLREANMTPVLCTQPRRFAVVAVSKMVAKALQCEVGEEVGYHIGHSKVLSSSSKIIFKTAGVLLEEMRDKGRNALNYKAIILDEVHERSVESDLVLVCVKQFLLRHKDIRLVLMSATADISRYRDYFKDLERGERVEVLAIPSSSQHSNFQRKVLYLEQVTELLGESSDSTDSLSVKYCYGTSPSMAKADIKRDVHKLIHELVLHIHNNEPDITKSILIFLPTYYSLEQQWLLLKPLSSSFKVHILHSSVDTEQALMAMKIWKSHRKVILATNIAESSVTIPEVAHVIDSCRSLQVYWDENRKRDTAELVWASKSQAEQRKGRTGRTCDGQIYRLVTGSFFSKLPEFESPAILKLSLRLQVLLICCAESKSINDPKVLLQKALDSPDPEIIEDALSLLVHIKALKRGHVRGRYEPTFYGRLLATLSLSFDASVLILKFGAIGMLREGILLGIIMDMQPPPIVRPFGQDNLFTEYTDSYYAVGEANPSLIGRKEEIFLANLCAYQFWQRIYKDNLRLQRLKQLLDVDEIKAPQALLSKIEEEWCSFHNLLQSSMHQISEIYDDILCSLHRYRPKFLATSSDCPSYYHPYEFRHTCFLECPPSNDAVEADEQNETKKCVTVPFVASHHFQVQSVAEKFANIIKEIRVEHTKESTDDHHQYADEEGAFLNEEVSLCRYFVKGLCNRGGDCIFSHSLLAQRPVCKFFASFQGCRNGDSCFFSHDLGPHVLSPGKDFCVPEDEDADVDGLVKLFPTSSDGSILLLDDTDLHFSTKFSQHYDPSKIVSTTPLSETSIFDPSLSNVKILWGIASPFQIFTFGAVETRITWDAVRCVFWFPNFDSCDEDPERQRCLVQNFFEHLAIRMLADTLFDMHVILIMNNIRFSQLQVEKLGRDCFFLLSKSLPFSETSFGLLPDAVNTKKPLMVSRPITYVFSLHPPSDLQFGNYTAALIDGLHGIRSKE*

Click here to download the sequence:
Link to NCBI Protein BLAST