Transcript Information: R_Transcript_183983.p2


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value8E-23
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.2072064123491
Replicate 20.55545768297085
Replicate 30.90899752365684
Condition 2: 8 Hour
Replicate 10.12955484099071
Replicate 20.94649235306606
Replicate 31.1044630800765
Condition 3: 24 Hour
Replicate 10.91102409633746
Replicate 20.70016694890722
Replicate 30.57903980653167


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_183983.p2 GENE.R_Transcript_183983~~R_Transcript_183983.p2 ORF type:complete len:378 (+),score=76.12,UBN2_3|PF14244.2|4e-38,Retrotrans_gag|PF03732.13|8.6e-07 R_Transcript_183983:636-1769(+)
ATGTCAGGGAGAAACAATATGCAGTACTGTGATCCACTTTTCTTGCATCCTTCAGATGGTCCTTCGTCTATTTCTATTGAGGAGAAACTAATTGGAGCTGTAAATTACAGATCGTGGAAACGAAATATGGAGATTGCGTTGGCTACAAAGAGAAAATTGGGATTCATAAAAGGAACTGTTACAAGAGTTGATGATGATCCTACCAAGGCAGATCAATGGGACACCTGTAATAGCATGGTAATTGCTTGGCTTCTAAACTCAATGTCTGATTCTGTGAGGCGTTCTGTATTATACATTGATTCTGCATGTGGTATGTGGATACATCTTGAAAATAGGTTTTCTGTGAGTAATGGCTCAAGAAAGTACAAAATCAATAAGGAAATATATGACTTGAGACAAAATGGAACCAATATAAATGAGTTCTATACTAAGATGAGATGTCTTTGGGAAGAATTGGATTCCATGAGTACTTTGCCTAAGATAACTGAGTTCACTGAAGAAATTATAGTGTTCTTAAAGGCTTTGGATAAACAAAAAGAGGAACATAGGTTGTTTCAATTTCTAAATGGTCTGGATAATGTTTACAACATTCAAAGGAGCAATCTTCTATTCATGAATCCTCTGCCATCTGTAGAAATGGCATGTTCTAATCTTCAGCAAGAGGAGACTCAAAGGGATGTGCTAAATATTGTTGTGCCTGAAGTTGAATCTTCAGCTCTCTTTAGTAAGGGGGAGAATTCTTTTAAGTGCACTGGATGTGGTAGAACTGGTCACACAAGAGATAGATGCTGGTCTGAGCATGGGTATCCCTCTTGGCATCCTTTGGCCAAAAAGTTTCCACAAAAATCAAGAGGAAAAGATACCTACTCGAGCTCTGGTGCTAAAGGACCTCAAAATTGGAATAGATTCGCTGTGCATAAACCTAAACCACAGAATTGGAACCAACAGTCTGCTAATAATGTTCTTGCATCAGACAGTACAACTTCTACTGTATCTGGACCTGTTTTCACTCAACAGCAACTTGATCATATCATGAAACTCTTGCCTAGCACATCCAGAAATGGAAAGTCTTCTTCAAATACTGATGATGAAGTGGATACTGGCTTTGCAGGATTGTGCTACTCACAAGATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_183983.p2 GENE.R_Transcript_183983~~R_Transcript_183983.p2 ORF type:complete len:378 (+),score=76.12,UBN2_3|PF14244.2|4e-38,Retrotrans_gag|PF03732.13|8.6e-07 R_Transcript_183983:636-1769(+)
MSGRNNMQYCDPLFLHPSDGPSSISIEEKLIGAVNYRSWKRNMEIALATKRKLGFIKGTVTRVDDDPTKADQWDTCNSMVIAWLLNSMSDSVRRSVLYIDSACGMWIHLENRFSVSNGSRKYKINKEIYDLRQNGTNINEFYTKMRCLWEELDSMSTLPKITEFTEEIIVFLKALDKQKEEHRLFQFLNGLDNVYNIQRSNLLFMNPLPSVEMACSNLQQEETQRDVLNIVVPEVESSALFSKGENSFKCTGCGRTGHTRDRCWSEHGYPSWHPLAKKFPQKSRGKDTYSSSGAKGPQNWNRFAVHKPKPQNWNQQSANNVLASDSTTSTVSGPVFTQQQLDHIMKLLPSTSRNGKSSSNTDDEVDTGFAGLCYSQD*

Click here to download the sequence:
Link to NCBI Protein BLAST