Transcript Information: R_Transcript_183985.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-18
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.2499510019344
Replicate 20.3383089694469
Replicate 30.53056894734291
Condition 2: 8 Hour
Replicate 11.4548499817598
Replicate 21.1934811053201
Replicate 31.4258062722963
Condition 3: 24 Hour
Replicate 11.0172643685992
Replicate 20.57747908474825
Replicate 31.2563939246255


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_183985.p1 GENE.R_Transcript_183985~~R_Transcript_183985.p1 ORF type:complete len:993 (+),score=186.95,UBN2_3|PF14244.2|1.8e-31,rve|PF00665.22|2.9e-22,gag_pre-integrs|PF13976.2|9.5e+03,gag_pre-integrs|PF13976.2|9.7e-09,Retrotrans_gag|PF03732.13|3.9e-06 R_Transcript_183985:111-3089(+)
ATGGAGATTGCGTTGGCTACAAAGAGAAAATTGGGATTCATAAAAGGAACTGTTACAAGAGTTGATGATGATCCTACCAAGGCAGATCAATGGGACACCTGTAATAGCATGGTAATTGCTTGGCTTCTAAACTCAATGTCTGATTCTGTGAGGCGTTCTGTATTATACATTGATTCTGCATGTGGTATGTGGATACATCTTGAAAATAGGTTTTCTGTGAGTAATGGCTCAAGAAAGTACAAAATCAATAAGGAAATATATGACTTGAGACAAAATGGAACCAATATAAATGAGTTCTATACTAAGATGAGATGTCTTTGGGAAGAATTGGATTCCATGAGTACTTTGCCTAAGATAACTGAGTTCACTGAAGAAATTATAGTGTTCTTAAAGGCTTTGGATAAACAAAAAGAGGAACATAGGTTGTTTCAATTTCTAAATGGTCTGGATAATGTTTACAACATTCAAAGGAGCAATCTTCTATTCATGAATCCTCTGCCATCTGTAGAAATGGCATGTTCTAATCTTCAGCAAGAGGAGACTCAAAGGGATGTGCTAAATATTGTTGTGCCTGAAGTTGAATCTTCAGCTCTCTTTAGTAAGGGGGAGAATTCTTTTAAGTGCACTGGATGTGGTAGAACTGGTCACACAAGAGATAGATGCTGGTCTGAGCATGGGTATCCCTCTTGGCATCCTTTGGCCAAAAAGTTTCCACAAAAATCAAGAGGAAAAGATACCTACTCGAGCTCTGGTGCTAAAGGACCTCAAAATTGGAATAGATTCGCTGTGCATAAACCTAAACCACAGAATTGGAACCAACAGTCTGCTAATAATGTTCTTGCATCAGACAGTACAACTTCTACTGTATCTGGACCTGTTTTCACTCAACAGCAACTTGATCATATCATGAAACTCTTGCCTAGCACATCCAGAAATGGAAAGTCTTCTTCAAATACTGATGATGAAGTGGATACTGGCTTTGCAGGTATGTTGTATTGCCATAGCGCAGCTACATTTGCTAATGAATGGATTCTGGATTCTGGAGCATCTGATCATATGACTGCCACTTTCTCTAATCTTAATCATGCACAACCATCATCTTCTCACAACAAGATTAACCTTCCAAATGGTCAAACATCTCTCATTACTCATACTGGTTCAGTCATACTTGCAAATGACTTGCATCTTGCTGATGTTCTGTTTGTTCCATCACTCAAACATAATTTGCTGTCTATACAGAAGTTGACATCTACAAATAACTGCTATGTTACATTTTATCCTGATTTTTGCCTGATTCAGGATTGTGCTACTCACAAGATTAAGGCTGTGGGTAGAGCTTCAAGCGAGTTATACTATCTTGTCAACACCTCTTTGGATCAAATTGATCTTGCAAAATTTTCATTTCTGAATAAAAATTCTCCTAATGTGTCTCAATCTTCTTGTAATACTGGATTACTTACTGAATCATCTGTAAATCTCTGGCATAACAGATTAGGACATATTCCTGTAAATAGGTTGAAATTTGTTCCTGGTCTTTCTTTGAATTCTCAGTGTACTGATGATGTATGTGTCACTTGCCCTATGGCCAAATTTACAAAATTGCCTTTTTCCATTTCTCAGTCAGTTACTTCTCATGCTTTTGAAATGATTCATATTGATATTTGGGGACCTTATAAGGTTCAAACAAGGCATAAGTTCAGATTCTTTCTTACCATTGTGGATGATTTTTCTAGAGCCACTTGGGTATACCTTTTACACAACAAGTCAGACAGTCTTCAGACTATTCAAACCTTTCATGCCTTTGTTCTCAACCATTTTGGTACTCAAATTAAAACTATGAGATCTGATAATGCTTTAGAGTTTTCTAGTGGTCCTTGCAAACAATTTTTCTCTCAACATGGTATTATTCATCAGACCTCTTGTGTTGACAGGCCTCAACAAAATGGGAGGGTAGAGAGAAAGCATAGGCATTTGTTGGAAATCTCAAGGGCTCTGAGATTTCAAGCTGGTTTGCCTTTACAATTTTGGGGAGATAGTGTCTTACATGCTGCTTATCTTATTAATAGACTACCAACTTCTATTCTCAATAATCAGACACCTTATGAAAAACTTTTTCAAAAGCCTCCTCAGTATGATAATTTGAAAGCATTTGGTTGTCTAGCTTTTGCTTCCAATCCTGATAGGTCTGCTGATAAGTTTTCTCCCAGGGGTGTGCCTTCATTGTTTCTGGGGTATCCTGCCTCCCAGAAAGGTTTTAAGCTTCTTAATCTTCTTATTAACACTGCCTTTGTTAGTAGGGATGTTAAATTTCATGAGTCAATTTTTCCCTTTCTTCATAACTCATCCTCTTCTTATATGCATCCTATTCCTGTCTCTCTTCCTATATCTCATTCTACTTCCTCTACTATTGATCTAGATACCATTGTTTTTCCCTCTCCATCTTCATTTGATTCTATGCCTAGTTCTCCCACCACTGATATTTTCAGTCCTGTCAGCACCACAAATTCTTTATCTAGTCCCACCAACAGATCCACAAATTCCTCCAGTTCACCTAATCCTGTCATTTCTGCTCCAAGGAGATCTACCAGAACTTCAAAACCACCATCATGGTTAAAAGATTATGCTATGCATGCATCTTCAGAGAATTGTTCTCCAGCTATTGTGGCTTGTTCAGCTACTACTTCTGTTCTTCCATGCTATAAAGCTTTACTAGCAAATCTTCAAGATTTGCCAGAACCAGATTATTTTCATGAGGCTGTCAAAGATCCTGAATGGGTGGATGCTATGAACATTGAATTTGAGGCTATTGAGAGAAATGGCACATGGTCTTTAACTCAATTACCTCCGGGAAGAAAGGCTATTGAAGGCAAGTGGATTTTACTGCTCTTCTTGTATATGTGGATGACATGGTCATCACAGGCAGTAGCTCAGCTGTCATTAAAGAAGTTAAAGATATGCTCAGCTCCCAATTTCAGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_183985.p1 GENE.R_Transcript_183985~~R_Transcript_183985.p1 ORF type:complete len:993 (+),score=186.95,UBN2_3|PF14244.2|1.8e-31,rve|PF00665.22|2.9e-22,gag_pre-integrs|PF13976.2|9.5e+03,gag_pre-integrs|PF13976.2|9.7e-09,Retrotrans_gag|PF03732.13|3.9e-06 R_Transcript_183985:111-3089(+)
MEIALATKRKLGFIKGTVTRVDDDPTKADQWDTCNSMVIAWLLNSMSDSVRRSVLYIDSACGMWIHLENRFSVSNGSRKYKINKEIYDLRQNGTNINEFYTKMRCLWEELDSMSTLPKITEFTEEIIVFLKALDKQKEEHRLFQFLNGLDNVYNIQRSNLLFMNPLPSVEMACSNLQQEETQRDVLNIVVPEVESSALFSKGENSFKCTGCGRTGHTRDRCWSEHGYPSWHPLAKKFPQKSRGKDTYSSSGAKGPQNWNRFAVHKPKPQNWNQQSANNVLASDSTTSTVSGPVFTQQQLDHIMKLLPSTSRNGKSSSNTDDEVDTGFAGMLYCHSAATFANEWILDSGASDHMTATFSNLNHAQPSSSHNKINLPNGQTSLITHTGSVILANDLHLADVLFVPSLKHNLLSIQKLTSTNNCYVTFYPDFCLIQDCATHKIKAVGRASSELYYLVNTSLDQIDLAKFSFLNKNSPNVSQSSCNTGLLTESSVNLWHNRLGHIPVNRLKFVPGLSLNSQCTDDVCVTCPMAKFTKLPFSISQSVTSHAFEMIHIDIWGPYKVQTRHKFRFFLTIVDDFSRATWVYLLHNKSDSLQTIQTFHAFVLNHFGTQIKTMRSDNALEFSSGPCKQFFSQHGIIHQTSCVDRPQQNGRVERKHRHLLEISRALRFQAGLPLQFWGDSVLHAAYLINRLPTSILNNQTPYEKLFQKPPQYDNLKAFGCLAFASNPDRSADKFSPRGVPSLFLGYPASQKGFKLLNLLINTAFVSRDVKFHESIFPFLHNSSSSYMHPIPVSLPISHSTSSTIDLDTIVFPSPSSFDSMPSSPTTDIFSPVSTTNSLSSPTNRSTNSSSSPNPVISAPRRSTRTSKPPSWLKDYAMHASSENCSPAIVACSATTSVLPCYKALLANLQDLPEPDYFHEAVKDPEWVDAMNIEFEAIERNGTWSLTQLPPGRKAIEGKWILLLFLYMWMTWSSQAVAQLSLKKLKICSAPNFR*

Click here to download the sequence:
Link to NCBI Protein BLAST