Transcript Information: R_Transcript_18501.p1


Annotated TAIR IDAT2G22620.1
Annotated Gene NameRhamnogalacturonate lyase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:9604902-9610156 | Reverse length=677
E-Value1.2E-275
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 117.982145510287
Replicate 29.1897754047595
Replicate 310.569726101489
Condition 2: 8 Hour
Replicate 110.64444870852
Replicate 212.474319840187
Replicate 315.862460913068
Condition 3: 24 Hour
Replicate 115.941029350987
Replicate 28.9988074108439
Replicate 320.393885079186


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_18501.p1 GENE.R_Transcript_18501~~R_Transcript_18501.p1 ORF type:complete len:674 (+),score=69.57,Rhamnogal_lyase|PF06045.7|5e-74,CBM-like|PF14683.2|5.8e-54,fn3_3|PF14686.2|1.1e-29,fn3_3|PF14686.2|1.3e+04 R_Transcript_18501:255-2276(+)
ATGAAGATTCTGGGTTTGGCGATCCTCATTACCATAATTATTGAGCTGTCATTGGTTGGTCATTGTTGTGGCAAAACCCATGGAAGGCCAGTAAACGCAGACAACAATACACCTCCTGAGGTCATCTTAAACGTAACGGACAGAGAAGTAGTAATTGACAATGGAATTCTCCAAATCACAATTGCAAATCCAGAGGGTTATCTTACTGAGATTCGCTATGGTGGACTGAAAAACTTACTTGAAACCCGTAACAGAGGATCTGACAGAGGGTACTGGGATGCTGTTTGGGACACACCAGGTTACAATGGTACTGACTGGTTAATAGGATCAAGCTTCAATGTCATAGTAGAAAATGAGAACCAGGTGGAGGTTTCATTTACAAATAAATGGGATTCGGCCACCTGGAATTCATCACATGGATACTGGAGGCTTCCTGTAAATGTAGATAGAAGGTATATAGTTCTTCGTGGGTCCTCTGGGTTCTACTCCTATGCGATATTAGAGCGTGAGGAAGGATGGCCCTTGGCAAATGTCTACCAAATAAGAGCTGTGTATAAGCTTGATCGCGACCAGTTTCATTACATGGCCATTTCAGATGACAGGCAAAGGATCATGCCTATGCCACAGGATCGTGAGACTGGTTCACCCCTTGCGTTTAAAGAAGCCGTTCTTTTGACAAATCCCACCAATCCAGATCTCAGAGGAGAGGTCGATGACAAATACCAGTACTCATGCGAGGATAAAGACAATAAGGTGCATGGGTGGATATCATTCAATCCACAGATCGGGTTTTGGATGATAACACCCAACAATGAATTCCGTTCTGCTGGTCCTGTTAAGCAAGATCTCACTTCTCATGTTGGCCCCATCACATTAGCTATGTTCCACAGTGCTCACTATGCTGGTTATGACGTAACCATGAAATTCCAAGAAGGGGAGCCCTGGAAGAAGGTGTTTGGTCCGTACTTTGTTTATCTGAATTCAGTTTCTGAGGATAGAGATTTCCGTGAACTATGGGATGACGCAAAACACCAGATGAACCAGGAAGTTAGAAGCTGGCCTTATGAATTCCCAAAATCAGAAGACTTCCCCAAGTCTATTGAGCGTGGTTTCGTATATGGACGCCTGCTAGTGCGTGACAGGTACAGGAGGAGGACACTAATCCCCGGAAGTTCCGCCTGGATCGGACTGGCTGCACCAGGCGAAGCAGGATCGTGGCAAACTGAAACTAAGGGTTATCAGTTTTGGACTCAAGCTGACCGTTATGGAGGATTTATGATCAAAGGGATTCGGGAAGGTGTTTATAATTTGTATGCATGGGTTCCTGGTTTTATTGGGGATTATGTGTATGCCAAGGACATCACGATCAGTCCAGGCTGTGCAATCAGATTGGATGAACTTATATTTGAACCTCCAAGAAATGGACCGACAGTGTGGCAGATAGGTTCTCCAGACCGCACAGCGCTTGAGTTCTATGTACCTCAACCAAATACATTGTTTGTGAATAAACTTTACACTGATAGTGATCTAAACAAGTTCAGACAATATGGCCTTTGGGACCGATATGCTGAACTGTATCCTGAGAATGATCTCATATACACAGTGGGTGTCAGTGACTATCACACAGACTGGTTTTTTGCGCAAGTTACTAGGAAGTCGGAGAATAATACATACAAGGCAACCACATGGCAGATTATATTTCCACTCAAAGAAGTAATCCCGTCTGCAAATTATACGTTGCGAATTGCCTTGGCATCTGCTACTAGGTCTGAATTGCAAGTTCGATTCAACAATCCAGACTCGAGCCTTCCACACTTCACTACAATGTTAATAGGCACGGACAATGCTATTGCAAGACACGGAATCCACGGATTGTACAGGTTGTACAATGTTGATGTTCCGAGTGAATGGCTTGAAGTTGGAAACAACACAATATATCTGAGGCAATCGAAACATGACACCCCTTTCAATGGGGTCATGTATGATTATATCCGACTAGAAGGTCCCCCGAGAACAATATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_18501.p1 GENE.R_Transcript_18501~~R_Transcript_18501.p1 ORF type:complete len:674 (+),score=69.57,Rhamnogal_lyase|PF06045.7|5e-74,CBM-like|PF14683.2|5.8e-54,fn3_3|PF14686.2|1.1e-29,fn3_3|PF14686.2|1.3e+04 R_Transcript_18501:255-2276(+)
MKILGLAILITIIIELSLVGHCCGKTHGRPVNADNNTPPEVILNVTDREVVIDNGILQITIANPEGYLTEIRYGGLKNLLETRNRGSDRGYWDAVWDTPGYNGTDWLIGSSFNVIVENENQVEVSFTNKWDSATWNSSHGYWRLPVNVDRRYIVLRGSSGFYSYAILEREEGWPLANVYQIRAVYKLDRDQFHYMAISDDRQRIMPMPQDRETGSPLAFKEAVLLTNPTNPDLRGEVDDKYQYSCEDKDNKVHGWISFNPQIGFWMITPNNEFRSAGPVKQDLTSHVGPITLAMFHSAHYAGYDVTMKFQEGEPWKKVFGPYFVYLNSVSEDRDFRELWDDAKHQMNQEVRSWPYEFPKSEDFPKSIERGFVYGRLLVRDRYRRRTLIPGSSAWIGLAAPGEAGSWQTETKGYQFWTQADRYGGFMIKGIREGVYNLYAWVPGFIGDYVYAKDITISPGCAIRLDELIFEPPRNGPTVWQIGSPDRTALEFYVPQPNTLFVNKLYTDSDLNKFRQYGLWDRYAELYPENDLIYTVGVSDYHTDWFFAQVTRKSENNTYKATTWQIIFPLKEVIPSANYTLRIALASATRSELQVRFNNPDSSLPHFTTMLIGTDNAIARHGIHGLYRLYNVDVPSEWLEVGNNTIYLRQSKHDTPFNGVMYDYIRLEGPPRTI*

Click here to download the sequence:
Link to NCBI Protein BLAST