Transcript Information: R_Transcript_185552.p1


Annotated TAIR IDAT3G48550.1
Annotated Gene NameBEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3); Has 78 Blast hits to 78 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:17994048-17994595 | Forward length=158
E-Value2E-29
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.86331572083129
Replicate 20.8512013682283
Replicate 30.61910101611223
Condition 2: 8 Hour
Replicate 10.99267020056399
Replicate 22.1152185525446
Replicate 31.2264601770532
Condition 3: 24 Hour
Replicate 10.62048127642443
Replicate 21.4902201953093
Replicate 31.0352292757316


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_185552.p1 GENE.R_Transcript_185552~~R_Transcript_185552.p1 ORF type:complete len:148 (+),score=30.35 R_Transcript_185552:101-544(+)
ATGGAAGAAGATTTAGATCACCAAAAGGAGCTTCAACTCCTACCTCCTTCTTCTTCCACTTCCTCATCACGTGCCCTCACGTGGCTCTCCCACCACCATCACCGTCGCCCGCCACCTCCACCGCCTTCGTTGGACTTGAAGCTGTCCATCAGCCTACAGCCAGCGGCGGAGGCGGCGGAATTGGGGTGTGTGGAAGCACTGAAATGGCAGGCGGCCGAGCATATACGCTTGGCCGCCATCGAGAAGGCGTACGCGGAGCAGGTGAGGGAGCTGACTAGGAGAGAGATTGAGCTTGCTCAGTCGGAGTTCGCCCGGGCCCGTGCAATGTGGGATAAGGCCCGAGAAGAGGTGACCCGGGTTGAACGCCTTCGTGAGACTGCCACCTCTTGCATGGGGGAGCTCACTTGCCACTCTTGCAGGCAAAGGTTCCGTCCACCTCCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_185552.p1 GENE.R_Transcript_185552~~R_Transcript_185552.p1 ORF type:complete len:148 (+),score=30.35 R_Transcript_185552:101-544(+)
MEEDLDHQKELQLLPPSSSTSSSRALTWLSHHHHRRPPPPPPSLDLKLSISLQPAAEAAELGCVEALKWQAAEHIRLAAIEKAYAEQVRELTRREIELAQSEFARARAMWDKAREEVTRVERLRETATSCMGELTCHSCRQRFRPPP*

Click here to download the sequence:
Link to NCBI Protein BLAST