Transcript Information: R_Transcript_186479.p2


Annotated TAIR IDAT3G22470.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:7966066-7967925 | Reverse length=619
E-Value4E-39
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.13122687760186
Replicate 30
Condition 2: 8 Hour
Replicate 10.15303665592028
Replicate 20
Replicate 30.45379026550967
Condition 3: 24 Hour
Replicate 10.2869725903463
Replicate 20.13784536806611
Replicate 30.13679815429311


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_186479.p2 GENE.R_Transcript_186479~~R_Transcript_186479.p2 ORF type:3prime_partial len:160 (+),score=15.73,PPR_2|PF13041.2|1.3e-05,PPR_2|PF13041.2|8.4e-16,PPR_2|PF13041.2|1.4e-15,PPR_2|PF13041.2|1.2e-10,PPR_2|PF13041.2|9.2e-14,PPR_1|PF12854.3|2.8e-10,PPR_1|PF12854.3|1.5e-09,PPR_1|PF12854.3|1.7e-09,PPR_1|PF12854.3|3.6e-11,PPR_1|PF12854.3|0.0023,PPR|PF01535.16|4.1e-06,PPR|PF01535.16|2.4e-08,PPR|PF01535.16|1.6e-07,PPR|PF01535.16|1.3e-06,PPR|PF01535.16|4.6e+02,PPR_3|PF13812.2|1.1e+04,PPR_3|PF13812.2|0.0028,PPR_3|PF13812.2|5.9e-05,PPR_3|PF13812.2|0.0042,PPR_3|PF13812.2|0.045,PPR_3|PF13812.2|1.9e+03 R_Transcript_186479:1756-2232(+)
ATGAAGACCAAGGGAATCTCCCCTAATGTTGTCACCCACAATTCCTTACTTCGCGGTCTTTGTAGTTTAGGCCGATGTGATGACGCTAAGGAAGCATTGACTGAGATGTTGGAGAGCAATGTAGCACCAAATGTCCAAACTTATAGCATGCTGATTGACATGTATTGCAAAGGCGGCAAGGTCGAGCAAGCAAAGTCCTTACTTCACTTGATGATTGAGAGGGGTGTGTGGCCTAACATTGTTACCTACAATTCTCTTTTGGATGGATATTGTTCGGGATATCAAATGGATGAAGCATCAGAGTTAATAGATTTGATGGAAAATATTGGATGCCAACCTGATCTTGTCAGCGTCAATACCGTGATCAATGGGTATTGCAAGAGTAATAACCTCGTCGAAGCTTTCAGGCTGCTCAATGAAACGCCTTCTAAAGGATTGAGCCCCGATATATTTACGTATAACACTTTTATAGCTGGC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_186479.p2 GENE.R_Transcript_186479~~R_Transcript_186479.p2 ORF type:3prime_partial len:160 (+),score=15.73,PPR_2|PF13041.2|1.3e-05,PPR_2|PF13041.2|8.4e-16,PPR_2|PF13041.2|1.4e-15,PPR_2|PF13041.2|1.2e-10,PPR_2|PF13041.2|9.2e-14,PPR_1|PF12854.3|2.8e-10,PPR_1|PF12854.3|1.5e-09,PPR_1|PF12854.3|1.7e-09,PPR_1|PF12854.3|3.6e-11,PPR_1|PF12854.3|0.0023,PPR|PF01535.16|4.1e-06,PPR|PF01535.16|2.4e-08,PPR|PF01535.16|1.6e-07,PPR|PF01535.16|1.3e-06,PPR|PF01535.16|4.6e+02,PPR_3|PF13812.2|1.1e+04,PPR_3|PF13812.2|0.0028,PPR_3|PF13812.2|5.9e-05,PPR_3|PF13812.2|0.0042,PPR_3|PF13812.2|0.045,PPR_3|PF13812.2|1.9e+03 R_Transcript_186479:1756-2232(+)
MKTKGISPNVVTHNSLLRGLCSLGRCDDAKEALTEMLESNVAPNVQTYSMLIDMYCKGGKVEQAKSLLHLMIERGVWPNIVTYNSLLDGYCSGYQMDEASELIDLMENIGCQPDLVSVNTVINGYCKSNNLVEAFRLLNETPSKGLSPDIFTYNTFIAG

Click here to download the sequence:
Link to NCBI Protein BLAST