Transcript Information: R_Transcript_186485.p1


Annotated TAIR IDAT1G12775.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:4353906-4355840 | Forward length=644
E-Value2E-46
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.74501881447832
Replicate 20.21424796343161
Replicate 30.70122666110671
Condition 2: 8 Hour
Replicate 10.24985576476781
Replicate 20.34225839552835
Replicate 30.74088206613824
Condition 3: 24 Hour
Replicate 10.93705335623282
Replicate 20.56263415537187
Replicate 30.33501588806476


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_186485.p1 GENE.R_Transcript_186485~~R_Transcript_186485.p1 ORF type:5prime_partial len:196 (+),score=27.27,PPR_2|PF13041.2|3.6e-11,PPR_2|PF13041.2|7.1e-16,PPR_2|PF13041.2|1.9e-15,PPR_2|PF13041.2|7.6e-23,PPR_2|PF13041.2|6.1e-21,PPR_1|PF12854.3|0.006,PPR_1|PF12854.3|2.3e-10,PPR_1|PF12854.3|4.1e-06,PPR_1|PF12854.3|8.6e-15,PPR_1|PF12854.3|1.1e-15,PPR_1|PF12854.3|1e-11,PPR|PF01535.16|0.0006,PPR|PF01535.16|3.9e-08,PPR|PF01535.16|2.6e-05,PPR|PF01535.16|1.2e-10,PPR|PF01535.16|8.9e-09,PPR|PF01535.16|0.00055,PPR_3|PF13812.2|0.0048,PPR_3|PF13812.2|0.0019,PPR_3|PF13812.2|0.21,PPR_3|PF13812.2|3.3e-06,PPR_3|PF13812.2|3.6e-06,PPR_3|PF13812.2|0.35,MRP-S27|PF10037.5|0.49,MRP-S27|PF10037.5|0.31,MRP-S27|PF10037.5|2.5 R_Transcript_186485:2-589(+)
TCCTTACTTCGGGGTCTTTGTAGTTTAGGCCGATGGGATGACGCTAAGGAAGCATTGACCGAGATGTTGGAGAGCAATGTAGCGCCAAACATCCATACTTATAGCATGTTAATTGACATGTATTGTAAAGAGGGGATGGTTGAGGAAGCAAGATCCATACTTGAGTTGATGATTAAGAGCGATGAGACGCCAAACATTGTTACTTACTGTTCCCTTTTGGATGGATACTGTTTGCGTGGCCAAATGATTCAAGCATCAGAATTAATGGATTTGCTGGAAAAACATGGGTGCCATCCTAATGTTGTGACCTTGAACACCATGATCAATGGGTATTGCAAGAGTAGAGACCTTGATAAAGCTTTCATACTGTTCAAAGAAATGCCTTCTAAAGGATTGAGCCCCAATGTACATACATATAACACTCTCATAGACGGCTTGTGCAAGGTTAATAGACTTGAATGTGCACTTCAACTCTTCAAAGAGATGCAAGCTGCTCAAGGGATAACTCCAGATGTTGTCACCTTTAATACTTTGTTGGATGGCTTATGTAAGGATGGACAACTTGATGTGGCTGTAACAATGTCCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_186485.p1 GENE.R_Transcript_186485~~R_Transcript_186485.p1 ORF type:5prime_partial len:196 (+),score=27.27,PPR_2|PF13041.2|3.6e-11,PPR_2|PF13041.2|7.1e-16,PPR_2|PF13041.2|1.9e-15,PPR_2|PF13041.2|7.6e-23,PPR_2|PF13041.2|6.1e-21,PPR_1|PF12854.3|0.006,PPR_1|PF12854.3|2.3e-10,PPR_1|PF12854.3|4.1e-06,PPR_1|PF12854.3|8.6e-15,PPR_1|PF12854.3|1.1e-15,PPR_1|PF12854.3|1e-11,PPR|PF01535.16|0.0006,PPR|PF01535.16|3.9e-08,PPR|PF01535.16|2.6e-05,PPR|PF01535.16|1.2e-10,PPR|PF01535.16|8.9e-09,PPR|PF01535.16|0.00055,PPR_3|PF13812.2|0.0048,PPR_3|PF13812.2|0.0019,PPR_3|PF13812.2|0.21,PPR_3|PF13812.2|3.3e-06,PPR_3|PF13812.2|3.6e-06,PPR_3|PF13812.2|0.35,MRP-S27|PF10037.5|0.49,MRP-S27|PF10037.5|0.31,MRP-S27|PF10037.5|2.5 R_Transcript_186485:2-589(+)
SLLRGLCSLGRWDDAKEALTEMLESNVAPNIHTYSMLIDMYCKEGMVEEARSILELMIKSDETPNIVTYCSLLDGYCLRGQMIQASELMDLLEKHGCHPNVVTLNTMINGYCKSRDLDKAFILFKEMPSKGLSPNVHTYNTLIDGLCKVNRLECALQLFKEMQAAQGITPDVVTFNTLLDGLCKDGQLDVAVTMS*

Click here to download the sequence:
Link to NCBI Protein BLAST