Transcript Information: R_Transcript_186486.p1


Annotated TAIR IDAT3G22470.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:7966066-7967925 | Reverse length=619
E-Value2E-50
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.1076733354682
Replicate 30
Condition 2: 8 Hour
Replicate 10.125568538191
Replicate 20.22934237785831
Replicate 30.093085182668651
Condition 3: 24 Hour
Replicate 10.47092937902983
Replicate 20.33931167523965
Replicate 30.11224463941999


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_186486.p1 GENE.R_Transcript_186486~~R_Transcript_186486.p1 ORF type:5prime_partial len:195 (+),score=30.47,PPR_2|PF13041.2|2.4e-10,PPR_2|PF13041.2|1e-16,PPR_2|PF13041.2|6e-14,PPR_2|PF13041.2|7.5e-19,PPR_2|PF13041.2|4.5e-20,PPR_1|PF12854.3|0.014,PPR_1|PF12854.3|5e-09,PPR_1|PF12854.3|2.3e-10,PPR_1|PF12854.3|1.3e-15,PPR_1|PF12854.3|1.1e-11,PPR_1|PF12854.3|1e-11,PPR|PF01535.16|0.001,PPR|PF01535.16|9.1e-08,PPR|PF01535.16|3.3e-08,PPR|PF01535.16|1.2e-09,PPR|PF01535.16|8.1e-07,PPR|PF01535.16|0.00055,PPR_3|PF13812.2|0.05,PPR_3|PF13812.2|0.0006,PPR_3|PF13812.2|0.00012,PPR_3|PF13812.2|3.1e-06,PPR_3|PF13812.2|0.0055,PPR_3|PF13812.2|0.34,MRP-S27|PF10037.5|0.15,MRP-S27|PF10037.5|3.4,MRP-S27|PF10037.5|0.098,TPR_19|PF14559.2|0.0028,TPR_19|PF14559.2|2.3e+02,TPR_19|PF14559.2|3.6e+02,TPR_19|PF14559.2|1.3e+03 R_Transcript_186486:2-586(+)
TCCTTACTTCGGGGTCTTTGTAGTTTAGGCCGATGGGATGAGGCTAAGGAAGCATTGACTAAGATGTTGGATAGCAATGTAGCACCAAATGTCCAAACTTATAGCATGCTGATTGACATATATTGCAAAGGCGGGAAGGTTGAGCAAGCAAAGTCCATACTCGACTTGATGATTGAGAGAGGTATGTGGCCTAACATTGTTACCTACAGTTCTCTTTTGGATGGATACTGTTTGACAGGCCAAATGGATAAAGCCTCAGAGTTGATGGATCTGATGGCAAAACATGGGTGCCAACCTGATCTTGTCAGCTTCAACACCGTCATCAATGGGTATTGCAAGAGTAAGAACCTCGACGATGCTTTCAGGCTTTTCAAAGAAATGCATATCAAACGATTGAACCCTAATGTAATTAAATATAATACTCTGATACACGGCTTGTGCAAGGGTACTAGGCTCCAACATGCAGTTCGACTCTTCAAAGAGATGCAAGCTCAGGGGATAACTCCAGATGTTGTCACCTTTAATACTTTGTTGGATGGCTTATGTAAGGATGGACAACTTGATGTGGCTGTAACAATGTCCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_186486.p1 GENE.R_Transcript_186486~~R_Transcript_186486.p1 ORF type:5prime_partial len:195 (+),score=30.47,PPR_2|PF13041.2|2.4e-10,PPR_2|PF13041.2|1e-16,PPR_2|PF13041.2|6e-14,PPR_2|PF13041.2|7.5e-19,PPR_2|PF13041.2|4.5e-20,PPR_1|PF12854.3|0.014,PPR_1|PF12854.3|5e-09,PPR_1|PF12854.3|2.3e-10,PPR_1|PF12854.3|1.3e-15,PPR_1|PF12854.3|1.1e-11,PPR_1|PF12854.3|1e-11,PPR|PF01535.16|0.001,PPR|PF01535.16|9.1e-08,PPR|PF01535.16|3.3e-08,PPR|PF01535.16|1.2e-09,PPR|PF01535.16|8.1e-07,PPR|PF01535.16|0.00055,PPR_3|PF13812.2|0.05,PPR_3|PF13812.2|0.0006,PPR_3|PF13812.2|0.00012,PPR_3|PF13812.2|3.1e-06,PPR_3|PF13812.2|0.0055,PPR_3|PF13812.2|0.34,MRP-S27|PF10037.5|0.15,MRP-S27|PF10037.5|3.4,MRP-S27|PF10037.5|0.098,TPR_19|PF14559.2|0.0028,TPR_19|PF14559.2|2.3e+02,TPR_19|PF14559.2|3.6e+02,TPR_19|PF14559.2|1.3e+03 R_Transcript_186486:2-586(+)
SLLRGLCSLGRWDEAKEALTKMLDSNVAPNVQTYSMLIDIYCKGGKVEQAKSILDLMIERGMWPNIVTYSSLLDGYCLTGQMDKASELMDLMAKHGCQPDLVSFNTVINGYCKSKNLDDAFRLFKEMHIKRLNPNVIKYNTLIHGLCKGTRLQHAVRLFKEMQAQGITPDVVTFNTLLDGLCKDGQLDVAVTMS*

Click here to download the sequence:
Link to NCBI Protein BLAST