Transcript Information: R_Transcript_186712.p1


Annotated TAIR IDAT2G33760.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:14275800-14277551 | Forward length=583
E-Value4E-261
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.2906134008387
Replicate 20.42416768517774
Replicate 30.80983415743973
Condition 2: 8 Hour
Replicate 10.57710792804955
Replicate 20.90346997338124
Replicate 31.4362385507714
Condition 3: 24 Hour
Replicate 11.1594852135204
Replicate 21.1510320296429
Replicate 31.842399384419


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_186712.p1 GENE.R_Transcript_186712~~R_Transcript_186712.p1 ORF type:5prime_partial len:594 (+),score=100.81,PPR_2|PF13041.2|3.9e-05,PPR_2|PF13041.2|5,PPR_2|PF13041.2|9.1e-11,PPR_2|PF13041.2|1.8e-05,PPR_2|PF13041.2|1.3e-12,PPR_2|PF13041.2|0.32,PPR_2|PF13041.2|2e+02,PPR_2|PF13041.2|1.3e+02,PPR|PF01535.16|1.5e+02,PPR|PF01535.16|3.8e+02,PPR|PF01535.16|0.36,PPR|PF01535.16|4.4e-07,PPR|PF01535.16|16,PPR|PF01535.16|5.7e-06,PPR|PF01535.16|7.8e-08,PPR|PF01535.16|0.00075,PPR|PF01535.16|0.4,PPR|PF01535.16|8.3e+02,PPR|PF01535.16|8.7,DYW_deaminase|PF14432.2|5e-40,PPR_1|PF12854.3|44,PPR_1|PF12854.3|2.9e+02,PPR_1|PF12854.3|2.2,PPR_1|PF12854.3|0.012,PPR_1|PF12854.3|1.3e+02,PPR_1|PF12854.3|7.6e-05,PPR_1|PF12854.3|0.074,PPR_1|PF12854.3|0.0031,PPR_1|PF12854.3|25,PPR_1|PF12854.3|4e+03,PPR_3|PF13812.2|3.9e+03,PPR_3|PF13812.2|1.4e+02,PPR_3|PF13812.2|9.4e+02,PPR_3|PF13812.2|4.8,PPR_3|PF13812.2|9,PPR_3|PF13812.2|0.00023,PPR_3|PF13812.2|5.7,PPR_3|PF13812.2|0.0033,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|49 R_Transcript_186712:1-1782(+)
GTTTCTCTCTCTCTCTCTCTCTCTCTCTTTAATGGCGGGTTCCCAATGCAGGACCCTTCACCACCTCCACCCTATCAATTACTACTACGAGCGGGCCCACGTCTCAAACCACTCAAACAGGTGCACGCCTACCTAATCACCACTGGATCCCACCTCACCCGATCAATACTCACAAAGCTCGCAGCTTTGGCCTGCACTTCAAAATCCACATCCTACACCCGAAAACTCGCTCTCTCCATACCCAACCCGGATTCCTACCTCTTCAACACCCTCATTCGAATCTCCTCCAAAGTGGGTCTCCAATACGACGCCGTTTTCTTCTACAACCGTATGCTCCACTCTCTCACCACCCCACCATCAAACTACACTTTCACTTCTGTGATCAAGGCTTGTGCTGATGTATCAGCCTTGAAGTTGGGCAAATGTGTACATTCCCATGCTGTGGTAAATGGGTTTGTGTTAGATTCTTTTGTACAGTCTTCTTTGGTTGCCTTTTATGCTAAATGTAGTGAGCTGAGTCATGCACGGAAGATGTTTGACAAAATGCCTCAAAGAAGTATTGTTGCTTGGAATGCCATGATTTCGGGGCTCGAGCGGAATGGGCATGCTAAGGAAGGGGTTGAGTTGTTTGATTTGATGAGGGGTTCGGGTGTTGATCCGGATTTGGCTACCTTTGTGAGTCTTTTATCGGCATGTGCTCAATTGGGTTCGGTTGAGCTAGGTTCTTGGATTCATGATTATATTGCGAATCATGGTTTTGAAGTGAATGTTGTTGTTGGGACAGCTTTGATTAACATGTATGCTAAATGTGGGAATGTGAGGAAAGCGAGGGAGGTTTTTGATGCGATGAAGGATAAGAATGTTGTTGCTTGGACTGCAATGATTTCGGGGTATGGAGTTCATGGCTATGGTAAAGAAGCTATCGAGCTATATGAATCAATGAAAGGTTATGGTATAGTGCCTAACGAGATCACGTTTGTGAGTGTTTTATCGGCTTGTGCTCATGCTGGGATGGTTGATGAAGGGCGCAAAATATTTTCAAGCATGAGAAGAGTTTATGGTTTGGTGCCTACAATTGAGCATCATGTTTGTATGGTTGATTTGCTTGGAAGAGCTGGACTGCTTAATGAGGCTTATAGTTATGTTAAAGAGCTGAAGAAGCCAGGTCCAGCGATATGGTCCGCTTTGCTAGGGGCTTGCAAGATGCACAAGAAATTCGATTTGGGTGTTAGAGCTGCTGAGCAGCTCTTAGCTATCGACTCTGCAAATCCAGGGCATTATGTTATGATATCGAATGTATATGCATTGGCTGGAAAGATGGATAGAGTAGAAAAGATTAGAAATGTGATGATAAAAAGACGCTTGAAGAAGCATGTTGGGTATAGCACAATAGAGATTGATCAAAAGACGCATTTGTTTAGCATGGGTGACAAGTCTCACCCTGAGACGAGTGAAATTTATGCGTACTTAGATGATTTGATGGGAAGGATAAGTGAAGCAGGTTATGTGCCAGCACAAGAGGCAGTCCTTCACGAGTTGGAAGAAGAGGAGAGGGAATATGCCCTTAGATACCACAGCGAGAAGCTTGCAATAGCCTTTGGTTTGTTAAAAGCTAAGAGTGGTTCTCCTATAAGGATTGTGAAGAATTTAAGGATGTGTGAGGACTGCCATTTAGCCATCAAGTTCATGTCTAGTGTTACAAATAGGGAAGTCATTGTTCGGGATAAGCTTCGTTTTCACCATTTTAAGGATGGGCTGTGCTCTTGTGCTGATTATTGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_186712.p1 GENE.R_Transcript_186712~~R_Transcript_186712.p1 ORF type:5prime_partial len:594 (+),score=100.81,PPR_2|PF13041.2|3.9e-05,PPR_2|PF13041.2|5,PPR_2|PF13041.2|9.1e-11,PPR_2|PF13041.2|1.8e-05,PPR_2|PF13041.2|1.3e-12,PPR_2|PF13041.2|0.32,PPR_2|PF13041.2|2e+02,PPR_2|PF13041.2|1.3e+02,PPR|PF01535.16|1.5e+02,PPR|PF01535.16|3.8e+02,PPR|PF01535.16|0.36,PPR|PF01535.16|4.4e-07,PPR|PF01535.16|16,PPR|PF01535.16|5.7e-06,PPR|PF01535.16|7.8e-08,PPR|PF01535.16|0.00075,PPR|PF01535.16|0.4,PPR|PF01535.16|8.3e+02,PPR|PF01535.16|8.7,DYW_deaminase|PF14432.2|5e-40,PPR_1|PF12854.3|44,PPR_1|PF12854.3|2.9e+02,PPR_1|PF12854.3|2.2,PPR_1|PF12854.3|0.012,PPR_1|PF12854.3|1.3e+02,PPR_1|PF12854.3|7.6e-05,PPR_1|PF12854.3|0.074,PPR_1|PF12854.3|0.0031,PPR_1|PF12854.3|25,PPR_1|PF12854.3|4e+03,PPR_3|PF13812.2|3.9e+03,PPR_3|PF13812.2|1.4e+02,PPR_3|PF13812.2|9.4e+02,PPR_3|PF13812.2|4.8,PPR_3|PF13812.2|9,PPR_3|PF13812.2|0.00023,PPR_3|PF13812.2|5.7,PPR_3|PF13812.2|0.0033,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|49 R_Transcript_186712:1-1782(+)
VSLSLSLSLFNGGFPMQDPSPPPPYQLLLRAGPRLKPLKQVHAYLITTGSHLTRSILTKLAALACTSKSTSYTRKLALSIPNPDSYLFNTLIRISSKVGLQYDAVFFYNRMLHSLTTPPSNYTFTSVIKACADVSALKLGKCVHSHAVVNGFVLDSFVQSSLVAFYAKCSELSHARKMFDKMPQRSIVAWNAMISGLERNGHAKEGVELFDLMRGSGVDPDLATFVSLLSACAQLGSVELGSWIHDYIANHGFEVNVVVGTALINMYAKCGNVRKAREVFDAMKDKNVVAWTAMISGYGVHGYGKEAIELYESMKGYGIVPNEITFVSVLSACAHAGMVDEGRKIFSSMRRVYGLVPTIEHHVCMVDLLGRAGLLNEAYSYVKELKKPGPAIWSALLGACKMHKKFDLGVRAAEQLLAIDSANPGHYVMISNVYALAGKMDRVEKIRNVMIKRRLKKHVGYSTIEIDQKTHLFSMGDKSHPETSEIYAYLDDLMGRISEAGYVPAQEAVLHELEEEEREYALRYHSEKLAIAFGLLKAKSGSPIRIVKNLRMCEDCHLAIKFMSSVTNREVIVRDKLRFHHFKDGLCSCADYW*

Click here to download the sequence:
Link to NCBI Protein BLAST