Annotated TAIR ID | AT3G01610.1 |
Annotated Gene Name | cell division cycle 48C |
Annotated Gene Symbol(s) | CDC48C, emb1354 |
Annotation Type | Homolog |
Chromosome Position | chr3:231787-235057 | Forward length=820 |
E-Value | 1E-137 |
Replicate 1 | 0.70529215435544 |
Replicate 2 | 0.1622588903887 |
Replicate 3 | 0.24783178233859 |
Replicate 1 | 0.83259509866985 |
Replicate 2 | 0.34560868378958 |
Replicate 3 | 0.78554110876481 |
Replicate 1 | 0.49676862625635 |
Replicate 2 | 0.51132748587119 |
Replicate 3 | 0.37212480920536 |
>R_Transcript_187191.p1 GENE.R_Transcript_187191~~R_Transcript_187191.p1 ORF type:5prime_partial len:647 (+),score=147.83,AAA|PF00004.25|1.5e-40,AAA|PF00004.25|5.7e-36,RuvB_N|PF05496.8|1.5e-06,RuvB_N|PF05496.8|1.7e+03,RuvB_N|PF05496.8|0.00012,AAA_16|PF13191.2|1.1e-05,AAA_16|PF13191.2|2.9e+02,AAA_16|PF13191.2|0.0021,AAA_16|PF13191.2|2.8e+03,AAA_2|PF07724.10|4e+03,AAA_2|PF07724.10|4.2e-06,AAA_2|PF07724.10|0.0048,AAA_22|PF13401.2|0.006,AAA_22|PF13401.2|11,AAA_22|PF13401.2|0.031,AAA_22|PF13401.2|2.8e+02,AAA_17|PF13207.2|0.0017,AAA_17|PF13207.2|0.00056,AAA_5|PF07728.10|0.00028,AAA_5|PF07728.10|0.014,AAA_14|PF13173.2|0.00068,AAA_14|PF13173.2|0.049,TIP49|PF06068.9|0.0012,TIP49|PF06068.9|0.016,NACHT|PF05729.8|0.0023,NACHT|PF05729.8|2.5e+02,NACHT|PF05729.8|0.89,AAA_33|PF13671.2|0.026,AAA_33|PF13671.2|0.013,RNA_helicase|PF00910.18|0.018,RNA_helicase|PF00910.18|0.035,AAA_19|PF13245.2|0.027,AAA_19|PF13245.2|0.017,Mg_chelatase|PF01078.17|0.0039,Mg_chelatase|PF01078.17|0.06,AAA_28|PF13521.2|0.0014,AAA_28|PF13521.2|0.57,IstB_IS21|PF01695.13|0.0046,IstB_IS21|PF01695.13|0.12,AAA_18|PF13238.2|0.0075,AAA_18|PF13238.2|0.18,AAA_25|PF13481.2|0.39,AAA_25|PF13481.2|1.6,AAA_25|PF13481.2|6.4e+03,AAA_25|PF13481.2|1.4,AAA_25|PF13481.2|4.2e+03,TsaE|PF02367.13|0.036,TsaE|PF02367.13|0.35,Viral_helicase1|PF01443.14|3.6e+03,Viral_helicase1|PF01443.14|0.0016,Viral_helicase1|PF01443.14|7.3,Zeta_toxin|PF06414.8|3e+03,Zeta_toxin|PF06414.8|0.22,Zeta_toxin|PF06414.8|3.8e+03,Zeta_toxin|PF06414.8|0.074,Arch_ATPase|PF01637.14|0.073,Arch_ATPase|PF01637.14|1.1,Arch_ATPase|PF01637.14|8.1e+02 R_Transcript_187191:1-1941(+)
AAGAGATACAGCGGCCAGAATGGCCATGGCAATGGTCGTAATCAGCCTTTGCTTTTACGTCGGTTAAAGCAGAACCGTAGTCATTACCATGAAGTGGAGGATGCTGTCAAATATCTTCAGTCTCAGTATCCAGAATACAAGAGGATGAGTGCTTCAGTCCTCAATAGAAGTGTTGAAAAAGATATTGTCAAATCCTCCACTCAAAACAAAAGCAAGAGCAGGCGCAATGGCGGTGATAAGAATGTCTGTGAATGTCGACAATCACAGACTTCAGTGTTTGAGCTAAATTCAGAGTCAGAATCGACAGGTGGGCAGGTCTCGAATCCTAAGACTGATCTGATGAAATCGATGCTCAGGAAAGGGTATAGTCATAATGGTGGTGGTGGGGAAAAGAATGTGCAAGTATTAGAAAATGAAGAAAAGCAAGATAATCCAATGAAAGGTGGAGTTATGCTTGAGACAGTACACAAGGGACTGGGGAAAAAGGATTTGAATCAACAAGAAGAGGCAAGAGGGGGGCGCGGGTACCCCATGTTTAAGGACTTTGGTGGTATGGATGAAGTGGTTGAAGAATTGATATACAATGTTGTTATCCCACTATGTCATCCAGAACTCCTGAACCGGCTAAGAGGGTTGCGTGCAGGGCCACCGACGGGAATTCTACTACATGGACCTCCTGGTTGTGGGAAGACCATGTTGGCTCAAGCTATTGCCAATGAGGCTGGTGTTCCTTTGTATCAGGTTGCAGCCACAGAGTTTGTATCTGGAGTTGCAGGTCAGTCAGAAGAGAACATCCGTGAGCTTTTCTCAAAAGCTTGCAAGACATCTCCTTCAATTATCTTCATTGATGAGATTGATGCCATTGCTGAAAAAAGAGAAAACTCACAAAAAGCGATGCATGGGCGAATTGTCACGCAATTATTGAAGTGCATGGATAGTATCCAGGAGGGTGTTTCTCCAACAGGTCTAGGAGGTTCAGAATGCAAGGATAGACTGCATGCATCTCCAGACAATTCAGATGCTGATTCTAGACCTGGCCATGTTCTTGTTATTGGAGCTACCAACCGACCAAATTCTCTTGATCATGCATTAAGACGACCTGGACGCTTTACTCGGGAGATTAAGCTTGGAGCTCCGGATGTAAATGCAAGGTTTGAGATACTTTCAGTGTTGACGCGTGATCTTGGAGTGCAAGATGGTTTGGACATTAGAAAATTGGCTAGGGATACACAAGGTTTTGTTGGTGCGGACTTAGAAGAATGTGTTAGTAAAGCTTGTTTACTTGCTGTGCGAAAGATGATTAACTCAAAAAAGTCTGAGGGTGTAGCGGAAAATGCACTTATGCTCCATGCTGACAATTGGTGGAAGCAACTACAATTTAAACATGGACAATTGAAAACTCTTGCGCCAACAATGGCTGATTTTGAGGTGGCAGTTAAACATGTTCAACCCTCCTTGAAAAGAGAAGGTTTCTCTACAGTTCCAAGTGCAAAATGGGAGGATGTAGGAGGACTTGATAAAATAAGGAAGCTGTTCCAGAGTAGCATAATTCATCCAGTAAAATGCCCTGAAGATTATGAGGCGGTTCGAAAGGATTTACCAGCAGGATTTTTGCTTTATGGTCCCCCTGGTTGTGGTAAAACGTTGATTGCCAAGGCTGTTGCCAATGAGGCTGGGGCTAGTTTCATACATATCAAGGGCCCTGAAATTCTGGACAAATATGTTGGTGAAAGTGAATTGGCTGTTCGTCAAATATTCAGTCGCGCAAGGATGTGCTCTCCGTGTATTATTTTCTTTGATGAGGTGGATGCTTTGACAGCAAAGCATGGAGGATATAGCGGTGTTACTGAAAGGGTTATGAAGCAGCTTCTGATTGAGCTAGATGGCGCAGAAGAAAGGCGCGGTGTATATGTCATTGGTGCAACAAACCAGAGTCGATAG
Click here to download the sequence:
Link to NCBI Nucleotide BLAST
>R_Transcript_187191.p1 GENE.R_Transcript_187191~~R_Transcript_187191.p1 ORF type:5prime_partial len:647 (+),score=147.83,AAA|PF00004.25|1.5e-40,AAA|PF00004.25|5.7e-36,RuvB_N|PF05496.8|1.5e-06,RuvB_N|PF05496.8|1.7e+03,RuvB_N|PF05496.8|0.00012,AAA_16|PF13191.2|1.1e-05,AAA_16|PF13191.2|2.9e+02,AAA_16|PF13191.2|0.0021,AAA_16|PF13191.2|2.8e+03,AAA_2|PF07724.10|4e+03,AAA_2|PF07724.10|4.2e-06,AAA_2|PF07724.10|0.0048,AAA_22|PF13401.2|0.006,AAA_22|PF13401.2|11,AAA_22|PF13401.2|0.031,AAA_22|PF13401.2|2.8e+02,AAA_17|PF13207.2|0.0017,AAA_17|PF13207.2|0.00056,AAA_5|PF07728.10|0.00028,AAA_5|PF07728.10|0.014,AAA_14|PF13173.2|0.00068,AAA_14|PF13173.2|0.049,TIP49|PF06068.9|0.0012,TIP49|PF06068.9|0.016,NACHT|PF05729.8|0.0023,NACHT|PF05729.8|2.5e+02,NACHT|PF05729.8|0.89,AAA_33|PF13671.2|0.026,AAA_33|PF13671.2|0.013,RNA_helicase|PF00910.18|0.018,RNA_helicase|PF00910.18|0.035,AAA_19|PF13245.2|0.027,AAA_19|PF13245.2|0.017,Mg_chelatase|PF01078.17|0.0039,Mg_chelatase|PF01078.17|0.06,AAA_28|PF13521.2|0.0014,AAA_28|PF13521.2|0.57,IstB_IS21|PF01695.13|0.0046,IstB_IS21|PF01695.13|0.12,AAA_18|PF13238.2|0.0075,AAA_18|PF13238.2|0.18,AAA_25|PF13481.2|0.39,AAA_25|PF13481.2|1.6,AAA_25|PF13481.2|6.4e+03,AAA_25|PF13481.2|1.4,AAA_25|PF13481.2|4.2e+03,TsaE|PF02367.13|0.036,TsaE|PF02367.13|0.35,Viral_helicase1|PF01443.14|3.6e+03,Viral_helicase1|PF01443.14|0.0016,Viral_helicase1|PF01443.14|7.3,Zeta_toxin|PF06414.8|3e+03,Zeta_toxin|PF06414.8|0.22,Zeta_toxin|PF06414.8|3.8e+03,Zeta_toxin|PF06414.8|0.074,Arch_ATPase|PF01637.14|0.073,Arch_ATPase|PF01637.14|1.1,Arch_ATPase|PF01637.14|8.1e+02 R_Transcript_187191:1-1941(+)
KRYSGQNGHGNGRNQPLLLRRLKQNRSHYHEVEDAVKYLQSQYPEYKRMSASVLNRSVEKDIVKSSTQNKSKSRRNGGDKNVCECRQSQTSVFELNSESESTGGQVSNPKTDLMKSMLRKGYSHNGGGGEKNVQVLENEEKQDNPMKGGVMLETVHKGLGKKDLNQQEEARGGRGYPMFKDFGGMDEVVEELIYNVVIPLCHPELLNRLRGLRAGPPTGILLHGPPGCGKTMLAQAIANEAGVPLYQVAATEFVSGVAGQSEENIRELFSKACKTSPSIIFIDEIDAIAEKRENSQKAMHGRIVTQLLKCMDSIQEGVSPTGLGGSECKDRLHASPDNSDADSRPGHVLVIGATNRPNSLDHALRRPGRFTREIKLGAPDVNARFEILSVLTRDLGVQDGLDIRKLARDTQGFVGADLEECVSKACLLAVRKMINSKKSEGVAENALMLHADNWWKQLQFKHGQLKTLAPTMADFEVAVKHVQPSLKREGFSTVPSAKWEDVGGLDKIRKLFQSSIIHPVKCPEDYEAVRKDLPAGFLLYGPPGCGKTLIAKAVANEAGASFIHIKGPEILDKYVGESELAVRQIFSRARMCSPCIIFFDEVDALTAKHGGYSGVTERVMKQLLIELDGAEERRGVYVIGATNQSR*
Click here to download the sequence:
Link to NCBI Protein BLAST