Transcript Information: R_Transcript_18729.p1


Annotated TAIR IDAT5G18650.1
Annotated Gene NameCHY-type/CTCHY-type/RING-type Zinc finger protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:6218260-6220374 | Forward length=267
E-Value8.1E-185
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 174.850761527
Replicate 262.362146012587
Replicate 369.660414704717
Condition 2: 8 Hour
Replicate 151.621319758185
Replicate 271.755068594849
Replicate 385.678311323841
Condition 3: 24 Hour
Replicate 156.280893091797
Replicate 245.015770944574
Replicate 360.436199508597


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_18729.p1 GENE.R_Transcript_18729~~R_Transcript_18729.p1 ORF type:complete len:268 (+),score=35.15,zinc_ribbon_6|PF14599.2|1.1e+04,zinc_ribbon_6|PF14599.2|1.6e+04,zinc_ribbon_6|PF14599.2|1e+04,zinc_ribbon_6|PF14599.2|3.5e-27,zf-CHY|PF05495.8|9.9e-22,zf-CHY|PF05495.8|1.6e+04,zf-CHY|PF05495.8|1.6e+04,zf-CHY|PF05495.8|22,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|7.3e-06,zf-C3HC4|PF00097.21|9.8e+03 R_Transcript_18729:346-1149(+)
ATGGAGGGCTTTGCTAATGAACGCCTTGATTTTGGGAAGATGGGTTATGGTTGTCAGCATTACAGGAGAAGATGTTTGATCCGAGCTCCTTGTTGCAATGAGGTTTACTCCTGTCGCCATTGCCATAATGAGGCTGCAAGCATGTTGCGCAACCCAATGGATCGGCATGAGCTTAATAGATATGAGGTTGAACAAGTTATTTGTGCAGTTTGTGACACAGAACAACCAGTAGGACGTGTTTGTACAAATTGCGGCGTCAATATGGGAGAGTACTTCTGCGAGATATGCAAGTTCTATGATGATGATATTGATAAAAAGCAATTTCACTGTGATGATTGTGGGATTTGCAGGGTTGGTGGACGTGAGAATTTCTTCCACTGCAAAAAGTGTGGTTCTTGCTATTCTGTCGCTCTACGTGATAATCATATGTGTATAGAGAACTCCATGCACCATCACTGTCCCATATGTTATGAGTACCTTTTTGACTCTTTGAAAGACACCACTGTCTTGAGATGTGGGCACACAATGCATTGTGAATGCTACCATGAGATGATAAAGCGAGACAAATATTGCTGCCCAATATGCTCTAAATCGGTGATTGACATGTCTAGGACCTGGAAGAGGCTAGATGAGGAGATTGAAGCTACCACTATGCCTGACGATTATCGCTACAAGAAGGTTTGGATTTTATGTAACGACTGCAACGACACTACCGAGGTCTCCTTCCACATAATTGGCCAGAAGTGCAGCCACTGCAACTCTTATAATACCCGTCAAATTGCACCTCCTGTTCTTCCTCAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_18729.p1 GENE.R_Transcript_18729~~R_Transcript_18729.p1 ORF type:complete len:268 (+),score=35.15,zinc_ribbon_6|PF14599.2|1.1e+04,zinc_ribbon_6|PF14599.2|1.6e+04,zinc_ribbon_6|PF14599.2|1e+04,zinc_ribbon_6|PF14599.2|3.5e-27,zf-CHY|PF05495.8|9.9e-22,zf-CHY|PF05495.8|1.6e+04,zf-CHY|PF05495.8|1.6e+04,zf-CHY|PF05495.8|22,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|7.3e-06,zf-C3HC4|PF00097.21|9.8e+03 R_Transcript_18729:346-1149(+)
MEGFANERLDFGKMGYGCQHYRRRCLIRAPCCNEVYSCRHCHNEAASMLRNPMDRHELNRYEVEQVICAVCDTEQPVGRVCTNCGVNMGEYFCEICKFYDDDIDKKQFHCDDCGICRVGGRENFFHCKKCGSCYSVALRDNHMCIENSMHHHCPICYEYLFDSLKDTTVLRCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRLDEEIEATTMPDDYRYKKVWILCNDCNDTTEVSFHIIGQKCSHCNSYNTRQIAPPVLPQ*

Click here to download the sequence:
Link to NCBI Protein BLAST