Transcript Information: R_Transcript_187686.p1


Annotated TAIR IDAT3G22470.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:7966066-7967925 | Reverse length=619
E-Value3E-96
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.78601267269124
Replicate 20.85391652410782
Replicate 30.43840646117038
Condition 2: 8 Hour
Replicate 11.0544152369627
Replicate 20.80242398951623
Replicate 31.6067215142448
Condition 3: 24 Hour
Replicate 11.153382659765
Replicate 20.47487399525166
Replicate 31.4661620364429


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_187686.p1 GENE.R_Transcript_187686~~R_Transcript_187686.p1 ORF type:5prime_partial len:418 (+),score=83.42,PPR_2|PF13041.2|3.5e-10,PPR_2|PF13041.2|5.8e-16,PPR_2|PF13041.2|6.2e-13,PPR_2|PF13041.2|3.6e-11,PPR_2|PF13041.2|5.8e-11,PPR_2|PF13041.2|1.3e-19,PPR_2|PF13041.2|2.7e-20,PPR_2|PF13041.2|2.6e-16,PPR_2|PF13041.2|1.1e-14,PPR_2|PF13041.2|1.8e-16,PPR_2|PF13041.2|0.00011,PPR_1|PF12854.3|2.4e-05,PPR_1|PF12854.3|2.6e-11,PPR_1|PF12854.3|1.9e-05,PPR_1|PF12854.3|5.2e-08,PPR_1|PF12854.3|2e-09,PPR_1|PF12854.3|3.6e-11,PPR_1|PF12854.3|1.2e-14,PPR_1|PF12854.3|1.1e-12,PPR_1|PF12854.3|2.6e-09,PPR_1|PF12854.3|1.9e-12,PPR_1|PF12854.3|3.8e-06,PPR|PF01535.16|0.0032,PPR|PF01535.16|2.2e-08,PPR|PF01535.16|0.0036,PPR|PF01535.16|1.4e-05,PPR|PF01535.16|7.2e-07,PPR|PF01535.16|5.1e-08,PPR|PF01535.16|4.4e-09,PPR|PF01535.16|8.6e-07,PPR|PF01535.16|3.8e-05,PPR|PF01535.16|1.4e-09,PPR|PF01535.16|6.5e-05,PPR_3|PF13812.2|0.079,PPR_3|PF13812.2|0.00032,PPR_3|PF13812.2|0.0084,PPR_3|PF13812.2|0.0077,PPR_3|PF13812.2|0.00083,PPR_3|PF13812.2|0.00033,PPR_3|PF13812.2|5.1e-06,PPR_3|PF13812.2|0.0006,PPR_3|PF13812.2|0.32,PPR_3|PF13812.2|0.0014,PPR_3|PF13812.2|0.0063,MRP-S27|PF10037.5|0.0019,MRP-S27|PF10037.5|0.4,MRP-S27|PF10037.5|0.051,MRP-S27|PF10037.5|1.6,MRP-S27|PF10037.5|4.5e+02,ATP13|PF12921.3|58,ATP13|PF12921.3|1.1e+02,ATP13|PF12921.3|2.1,ATP13|PF12921.3|42,ATP13|PF12921.3|4.1 R_Transcript_187686:3-1256(+)
GACATTGTTATCTATGGCACTATGATCAAAGGCCTTTGTAGAATTGGCGACAATGCTGGTGCTCTCCGCTTGCTCGGGAACATGGACCGTTCTGCCCTTTGTAAGCCCGACCTTGTCATTTACAGCACTATTATTGACAGTCTTTGTAAAGACAGGCTGTTGAATAAGGCTTTGAAACTCTTCTCCGAGATGAAGGACAAGGGCATTTCACCTAATGTCTGCAATTACAACTCTTTGGTTCGAGGATTCTTTAATTTGGGCCTCAGAGAAGAAGCTATGGCCTTGTTGGCTGACATGTTGGAGAGTAGCATTTCACCAGATGTTCAGACCTTCAGCATGCTAGTGGACATGTGTTGCAAAGATGGAAGGGTGGAGGAAGCAAAGTCCGTAATCGACTTCATGATTCAGAGAGGTGAGGCTCCAAACATCATTACCTACAATTCTCTCTTGGATGGATACTGTTTACGTGGCCAAATGGATGAGGCATCCAAGTCACTTGATTTCATGCTCAAAAGTGGTTTCCATCCTGATGTTGTGACCTTGAACACCTTGATCAACGGATTTGTCAAAGCTAAAATGATTGACAAAGCCATCAAAGTTTTCAAGGAAATGTCTTGTCAAGGGATTGTGCCTGATGTTACTACGTACAATACTCTTATAGATGGCTTGTGTAAAGCTAGAAAGCTGCAAGCTGCCCGTCAGATGTTTGACGAAATGCAGGTCAATGGAGTTGCTCCTGATGTAGTGACTTACGCATCATTGCTTGATGGCCTATGCAAAAACGCACAGTTTGATGAGGCAATGGAATTCTTGAGGGAGATGAATGGCAAGGGAGTGCACCCTAATCTCACCATCTACAATATATTAATTGATGGTCTTTGTGAGGCTGGGTTTCTTAAAGATGCATCAAATGTCTTCTCCAGTCTCCTGTCTAAGGGTTTGCGGCTAGATAATCAGACGTACAACATAATGATCAAAGGATTTTGTAAGAAAGGACTACTAAACGAGGCAAATGAGCTGTTCAAGAAGATGGAAGACAATGAATGTCCACCAGATGATTGCACCTACAACACAATCATTCGTGGTCACCTTTCTGCCAATAATATTAGGAAGGCCTTGGAGCTTGTGACCAGTATGAGGAGTAAAGGATATGCGGCAGAGAATCACATAATCACCTTATTTGCTAATTTACTCTCTGCTAATAAGATTAGTGATGTTGACAGGGAATTGCTGCAAACATTTTTCGCAACTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_187686.p1 GENE.R_Transcript_187686~~R_Transcript_187686.p1 ORF type:5prime_partial len:418 (+),score=83.42,PPR_2|PF13041.2|3.5e-10,PPR_2|PF13041.2|5.8e-16,PPR_2|PF13041.2|6.2e-13,PPR_2|PF13041.2|3.6e-11,PPR_2|PF13041.2|5.8e-11,PPR_2|PF13041.2|1.3e-19,PPR_2|PF13041.2|2.7e-20,PPR_2|PF13041.2|2.6e-16,PPR_2|PF13041.2|1.1e-14,PPR_2|PF13041.2|1.8e-16,PPR_2|PF13041.2|0.00011,PPR_1|PF12854.3|2.4e-05,PPR_1|PF12854.3|2.6e-11,PPR_1|PF12854.3|1.9e-05,PPR_1|PF12854.3|5.2e-08,PPR_1|PF12854.3|2e-09,PPR_1|PF12854.3|3.6e-11,PPR_1|PF12854.3|1.2e-14,PPR_1|PF12854.3|1.1e-12,PPR_1|PF12854.3|2.6e-09,PPR_1|PF12854.3|1.9e-12,PPR_1|PF12854.3|3.8e-06,PPR|PF01535.16|0.0032,PPR|PF01535.16|2.2e-08,PPR|PF01535.16|0.0036,PPR|PF01535.16|1.4e-05,PPR|PF01535.16|7.2e-07,PPR|PF01535.16|5.1e-08,PPR|PF01535.16|4.4e-09,PPR|PF01535.16|8.6e-07,PPR|PF01535.16|3.8e-05,PPR|PF01535.16|1.4e-09,PPR|PF01535.16|6.5e-05,PPR_3|PF13812.2|0.079,PPR_3|PF13812.2|0.00032,PPR_3|PF13812.2|0.0084,PPR_3|PF13812.2|0.0077,PPR_3|PF13812.2|0.00083,PPR_3|PF13812.2|0.00033,PPR_3|PF13812.2|5.1e-06,PPR_3|PF13812.2|0.0006,PPR_3|PF13812.2|0.32,PPR_3|PF13812.2|0.0014,PPR_3|PF13812.2|0.0063,MRP-S27|PF10037.5|0.0019,MRP-S27|PF10037.5|0.4,MRP-S27|PF10037.5|0.051,MRP-S27|PF10037.5|1.6,MRP-S27|PF10037.5|4.5e+02,ATP13|PF12921.3|58,ATP13|PF12921.3|1.1e+02,ATP13|PF12921.3|2.1,ATP13|PF12921.3|42,ATP13|PF12921.3|4.1 R_Transcript_187686:3-1256(+)
DIVIYGTMIKGLCRIGDNAGALRLLGNMDRSALCKPDLVIYSTIIDSLCKDRLLNKALKLFSEMKDKGISPNVCNYNSLVRGFFNLGLREEAMALLADMLESSISPDVQTFSMLVDMCCKDGRVEEAKSVIDFMIQRGEAPNIITYNSLLDGYCLRGQMDEASKSLDFMLKSGFHPDVVTLNTLINGFVKAKMIDKAIKVFKEMSCQGIVPDVTTYNTLIDGLCKARKLQAARQMFDEMQVNGVAPDVVTYASLLDGLCKNAQFDEAMEFLREMNGKGVHPNLTIYNILIDGLCEAGFLKDASNVFSSLLSKGLRLDNQTYNIMIKGFCKKGLLNEANELFKKMEDNECPPDDCTYNTIIRGHLSANNIRKALELVTSMRSKGYAAENHIITLFANLLSANKISDVDRELLQTFFAT*

Click here to download the sequence:
Link to NCBI Protein BLAST