Transcript Information: R_Transcript_187688.p1


Annotated TAIR IDAT1G62930.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:23306534-23308423 | Forward length=629
E-Value2E-95
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.65501056057603
Replicate 20.40184307016838
Replicate 30.27400403823149
Condition 2: 8 Hour
Replicate 10.29289312137853
Replicate 20.74892905688181
Replicate 30.65137358685599
Condition 3: 24 Hour
Replicate 10.82384475697503
Replicate 20.52763777250185
Replicate 30.62835515847552


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_187688.p1 GENE.R_Transcript_187688~~R_Transcript_187688.p1 ORF type:5prime_partial len:418 (+),score=79.51,PPR_2|PF13041.2|4.4e-05,PPR_2|PF13041.2|5.5e-17,PPR_2|PF13041.2|1.7e-11,PPR_2|PF13041.2|2e-11,PPR_2|PF13041.2|6.6e-17,PPR_2|PF13041.2|1.7e-18,PPR_2|PF13041.2|1.3e-19,PPR_2|PF13041.2|1e-16,PPR_2|PF13041.2|1.1e-13,PPR_2|PF13041.2|1.8e-16,PPR_2|PF13041.2|1.7e-06,PPR_1|PF12854.3|2.4e-05,PPR_1|PF12854.3|2.6e-11,PPR_1|PF12854.3|3.4e-06,PPR_1|PF12854.3|1.8e-08,PPR_1|PF12854.3|4.1e-10,PPR_1|PF12854.3|5.4e-10,PPR_1|PF12854.3|8.2e-14,PPR_1|PF12854.3|1.1e-12,PPR_1|PF12854.3|1.1e-09,PPR_1|PF12854.3|2.4e-14,PPR_1|PF12854.3|3.1e-05,PPR|PF01535.16|0.0032,PPR|PF01535.16|7.9e-08,PPR|PF01535.16|0.0011,PPR|PF01535.16|1.6e-05,PPR|PF01535.16|1.1e-07,PPR|PF01535.16|1.3e-06,PPR|PF01535.16|1.7e-08,PPR|PF01535.16|8.6e-07,PPR|PF01535.16|0.00014,PPR|PF01535.16|3.6e-10,PPR|PF01535.16|5e-05,PPR_3|PF13812.2|0.079,PPR_3|PF13812.2|0.00074,PPR_3|PF13812.2|0.00033,PPR_3|PF13812.2|0.0011,PPR_3|PF13812.2|0.0003,PPR_3|PF13812.2|0.029,PPR_3|PF13812.2|7.7e-06,PPR_3|PF13812.2|0.00028,PPR_3|PF13812.2|0.33,PPR_3|PF13812.2|3.8e-05,PPR_3|PF13812.2|0.028,MRP-S27|PF10037.5|7.1e+02,MRP-S27|PF10037.5|0.0002,MRP-S27|PF10037.5|0.48,MRP-S27|PF10037.5|0.9,MRP-S27|PF10037.5|38,MRP-S27|PF10037.5|18,MRP-S27|PF10037.5|3.6e+02,MRP-S27|PF10037.5|0.097,ATP13|PF12921.3|3,ATP13|PF12921.3|2.9e+02,ATP13|PF12921.3|88,ATP13|PF12921.3|2.1e+02,ATP13|PF12921.3|53,ATP13|PF12921.3|6.3e+02,ATP13|PF12921.3|1.4e+03 R_Transcript_187688:3-1256(+)
GACATTGTTATCTATGGCACTATGATCAAAGGCCTTTGTAGAATTGGCGACAATGCTGGTGCTCTCCGCTTGCTCGGGAACATGGACCGTTCTGCCCTTTGTAAGCCCGACCTTGTCATTTACACCACTATTATTGATAGTCTTTGTAAAGACAGGATGTTGAATGAGGCCTTGAAGCTCGTCTCCGAGATGAAGGGCAAGGGCATTTCACCTGATGTCCACACTTACACCTCTTTGGTTCGAGGTTTCTTTAATTTGGGCCTCAGAGAAGAAGCTATGGCCTTGTTGGCTGACATGTTGGAGAGTAGCATTTCACCAGATGTTCAGACCTTCAGCATGCTTGTGGATATGTGTTGCAAAGATGGCAGGGTGGAGGAAGCAGAATCCATAGTCGAATTCATGATTCAGAGGGGTGAGACCCCAGACATCATTACTTACAGTGCTCTCTTGGATGGATACTGTTTACGAGGCCAAATGGACGAGGCATCCAAGTTACTTGATTTCATGCTCAAACGTGGTTTCCATCCTAATGTTGTGACCTTTTCCACTTTGATAAACGGATTTATCAAGGCTAAAAACATTGACAAAGGTTTCAAAGTTTTTCAGGAAATGTCTTGTCATGGGATTGTACCTAATGTTGCTACCTACACCACTCTTATTGATGGCTTGTGTAAAGCTAGAAAGCTGCAAGCTGCTCGTCAGATGTTTGATGAAATGCAGGTTAATGGAGTTGCTCCAGATGTAGTGACTTATGCATCATTGCTTGATGGCTTATGCAAAAACGCACAGTTTGATGAGGCAATGGAATTCTTGAGGGAGATGAATGGCAAGGGAGTGCGCCCTGATCTCATCATTTACAATATCTTAATTGACGGTCTTTGTGAGGCTGGGTTTCTTGAAGACGCATTAGATGCCTTCTCCAGTCTCCCATCTGGTTTGCGGCCAGATAATCATACATACACAATACTCATAAAAGGATTCTGCAAGAAAGGGCTACTAGATGAGGCAAATGAGCTTTTAAAGGAGATGGAGAATAATGGATGCTCACTAGATGATTGCACCTACAACACAATTATTCGGGGATGCCTTTCTGCGAATGATATCATGAAGGCCTTGGAGCTTGTGAGTATTATGAGGAGCAAAGGATATGCGGCAGATAACCACACTACGTCCTTATTTGCGGACTTGCTATCTACTAATAATGATATTAGTGATGCCTATAGAGAATTGCTGCAAACTTTTTTTGCAGTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_187688.p1 GENE.R_Transcript_187688~~R_Transcript_187688.p1 ORF type:5prime_partial len:418 (+),score=79.51,PPR_2|PF13041.2|4.4e-05,PPR_2|PF13041.2|5.5e-17,PPR_2|PF13041.2|1.7e-11,PPR_2|PF13041.2|2e-11,PPR_2|PF13041.2|6.6e-17,PPR_2|PF13041.2|1.7e-18,PPR_2|PF13041.2|1.3e-19,PPR_2|PF13041.2|1e-16,PPR_2|PF13041.2|1.1e-13,PPR_2|PF13041.2|1.8e-16,PPR_2|PF13041.2|1.7e-06,PPR_1|PF12854.3|2.4e-05,PPR_1|PF12854.3|2.6e-11,PPR_1|PF12854.3|3.4e-06,PPR_1|PF12854.3|1.8e-08,PPR_1|PF12854.3|4.1e-10,PPR_1|PF12854.3|5.4e-10,PPR_1|PF12854.3|8.2e-14,PPR_1|PF12854.3|1.1e-12,PPR_1|PF12854.3|1.1e-09,PPR_1|PF12854.3|2.4e-14,PPR_1|PF12854.3|3.1e-05,PPR|PF01535.16|0.0032,PPR|PF01535.16|7.9e-08,PPR|PF01535.16|0.0011,PPR|PF01535.16|1.6e-05,PPR|PF01535.16|1.1e-07,PPR|PF01535.16|1.3e-06,PPR|PF01535.16|1.7e-08,PPR|PF01535.16|8.6e-07,PPR|PF01535.16|0.00014,PPR|PF01535.16|3.6e-10,PPR|PF01535.16|5e-05,PPR_3|PF13812.2|0.079,PPR_3|PF13812.2|0.00074,PPR_3|PF13812.2|0.00033,PPR_3|PF13812.2|0.0011,PPR_3|PF13812.2|0.0003,PPR_3|PF13812.2|0.029,PPR_3|PF13812.2|7.7e-06,PPR_3|PF13812.2|0.00028,PPR_3|PF13812.2|0.33,PPR_3|PF13812.2|3.8e-05,PPR_3|PF13812.2|0.028,MRP-S27|PF10037.5|7.1e+02,MRP-S27|PF10037.5|0.0002,MRP-S27|PF10037.5|0.48,MRP-S27|PF10037.5|0.9,MRP-S27|PF10037.5|38,MRP-S27|PF10037.5|18,MRP-S27|PF10037.5|3.6e+02,MRP-S27|PF10037.5|0.097,ATP13|PF12921.3|3,ATP13|PF12921.3|2.9e+02,ATP13|PF12921.3|88,ATP13|PF12921.3|2.1e+02,ATP13|PF12921.3|53,ATP13|PF12921.3|6.3e+02,ATP13|PF12921.3|1.4e+03 R_Transcript_187688:3-1256(+)
DIVIYGTMIKGLCRIGDNAGALRLLGNMDRSALCKPDLVIYTTIIDSLCKDRMLNEALKLVSEMKGKGISPDVHTYTSLVRGFFNLGLREEAMALLADMLESSISPDVQTFSMLVDMCCKDGRVEEAESIVEFMIQRGETPDIITYSALLDGYCLRGQMDEASKLLDFMLKRGFHPNVVTFSTLINGFIKAKNIDKGFKVFQEMSCHGIVPNVATYTTLIDGLCKARKLQAARQMFDEMQVNGVAPDVVTYASLLDGLCKNAQFDEAMEFLREMNGKGVRPDLIIYNILIDGLCEAGFLEDALDAFSSLPSGLRPDNHTYTILIKGFCKKGLLDEANELLKEMENNGCSLDDCTYNTIIRGCLSANDIMKALELVSIMRSKGYAADNHTTSLFADLLSTNNDISDAYRELLQTFFAV*

Click here to download the sequence:
Link to NCBI Protein BLAST