Transcript Information: R_Transcript_188003.p1


Annotated TAIR IDAT5G08720.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: Polyketide cyclase / dehydrase and lipid transport protein (TAIR:AT4G01650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:2841536-2845335 | Reverse length=719
E-Value2.8E-303
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.58470487737957
Replicate 20.58485516479939
Replicate 30.095710602769439
Condition 2: 8 Hour
Replicate 10.30692588373984
Replicate 20
Replicate 30.15168476841549
Condition 3: 24 Hour
Replicate 10.31974661877025
Replicate 20.33789393843503
Replicate 30.48774829385844


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_188003.p1 GENE.R_Transcript_188003~~R_Transcript_188003.p1 ORF type:5prime_partial len:718 (+),score=115.92,Polyketide_cyc|PF03364.16|1.5e-18,Polyketide_cyc|PF03364.16|2.2e-20,Polyketide_cyc2|PF10604.5|0.0011,Polyketide_cyc2|PF10604.5|0.00022 R_Transcript_188003:3-2156(+)
CTTACTCTCACTCTGAACTTCACTTCATCAAATTACCCTTCTTTTTTTTTTTATTCAAAAAAAAAAAAAAAAACCTCAATGATCTCCTCCTCACTCATCTTCAACCCTAATTCCCACCTTCAAATTCTCAAACCCTTTTTTTTGGCGCAAAGCATTAATTACATTGCATCAAACCCTAGATTGTGCTTCAATGGCGGTGGCCAACAGGCGAGGGTAGTGAACGGGTATCGATATTGCAATGGATCAGTAGAAAGTTTTAGAAGGGATGTGGTGGAAGATTTGGAGAGAGAAGTTCGTGATCGAAAGGTTCATTGTGAGGTTGATGTGATTTCTTGGAGAGAGCGTCGTATTAAGGCCGAGATTTTGGTGAATTCTGATGTTGAATCTGTTTGGAATGCTCTCACTGATTATGAGCGTCTCGCTGATTTCGTCCCCAATCTCGTTTGCAGTGGAAGAATCCCATGTCCATATCCTGATAGAATATGGTTAGAGCAAAGAGGCTTGCAAAGGGCGCTGTATTGGCATATAGAGGCCCGTGTTGTCTTGGATCTCCGAGAATTCCTTAACTCTTCAAATGATCGTGAACTGCACTTCTCCATGGTGGACGGGGACTTTAAAAAATTTGAAGGAAAATGGTCCGTCAAATCAAAGAAAAGGTCCTCACCAACAATACTATCTTATGAGGTCAATGTCATACCAATGTTCAATTTTCCTGCGATTTTCCTGGAGAGGATTATTCGATCAGACCTTCCTGTGAATCTTCGAGCTTTGGCTTGCAGAGCTGAGAGCAATTTTGAAGGGCTCCAGAAGATAGCCTTGACAGCTTCTTCAAAATCTGGGAGCACAGTCTTAGACATTACGTTAGAGGAAAGAGATATGTCTATCAGAGATCTTAAGAAGAGTTACTCTAATTCTTCCTCTGGGCCCTTGCCCCAGGCACCTTCTGAGTTGAACAGTAACTGGGGAGTATATGGTAAAGTTTGTAGGCTTGACAGGCCCTGCTTGGTGGATGAAATTCACCTCCGTAGATTGGATGGCTTATTGGAAAATGGTGGTGTTCATCGCTGTGTTGCTGCTAGCATAACAGTGAAAGCTCCCGTTCGTGAAGTCTGGAATGTTTTGACTGCTTATGAAAGTCTTCCAGAGATAGTTCCAAATCTGGCAATCAGCAAAGTGTTATCCAGAGATAACAACAAAGTTCGCATCGTACAGGAAGGATGCAAGGGCCTGTTGTATATGGTACTTCATGCTCGGGTCGTCATGGACTTGTGCGAACAGCTTGAGCAAGAGGTTAGTTTTGAACAGGTTGAAGGGGACTTTGACTCCTTTTGTGGAAGGTGGCAGCTTGAGCAGCTGGGAAACCAACACACACTGCTAAAATACTCTGTGGAATCAAAAATGCGCCAGGATACCTTTCTGTCAGAAGCGATTACGGAAGAGGTTATATATGAGGATCTTCCATCCAACCTGTGTGCTATCCGGGACTACATTGAGAAGAGGATAGGAACAAATTCCTCTGAGGTGTATGATCAAGAAAATGTGGAGCGGCTCAGTGGTGAAACACAGCAAGAGCAGCCTAGCACTTCATCCAGTAAAGGAAGTGATACTGACCCCATTACACTCACGGAAAATAAAACAAGCGCAAGGGCTTCAATTCTTATAAAACAAAGGCCAAGAGTTCCTGGTTTGCAACAGGATATTGAAGTTCTTAAATCTGAGATACTGTCATTTATTTCAGAGCATGGACAGGAAGGTTTTATGCCCATGAGGAAGCAACTTCGTGTTCATGGTAGGGTTGACATTGAGAAGGCGATCAATAGGATGGGTGGGTTTAGAAAAATTGCGTCCCTGATGAATCTCTCTCTGGCTTACAAACATCGAAAACCAAAGGGTTATTGGGATAACCTTGAAAATTTGCAGGAAGAAATTACTCGTTTTCAGAAGAACTGGGGGATGGATCCTTCATATATGCCCAGTAGAAAAGCCTTTGAACGTGCAGGACGTTATGACATTGCTCGTGCCCTGGAAAAATGGGGTGGCCTACACGAAGTTTCGCTTCTTTTGTCACTAAAACTGAGGCACCCAAACAGACAGGCAAGTCTATCTGGTGACAAGAAAAATGATTATGCTTCATCCCCAACTGCAGAGGCATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_188003.p1 GENE.R_Transcript_188003~~R_Transcript_188003.p1 ORF type:5prime_partial len:718 (+),score=115.92,Polyketide_cyc|PF03364.16|1.5e-18,Polyketide_cyc|PF03364.16|2.2e-20,Polyketide_cyc2|PF10604.5|0.0011,Polyketide_cyc2|PF10604.5|0.00022 R_Transcript_188003:3-2156(+)
LTLTLNFTSSNYPSFFFYSKKKKKTSMISSSLIFNPNSHLQILKPFFLAQSINYIASNPRLCFNGGGQQARVVNGYRYCNGSVESFRRDVVEDLEREVRDRKVHCEVDVISWRERRIKAEILVNSDVESVWNALTDYERLADFVPNLVCSGRIPCPYPDRIWLEQRGLQRALYWHIEARVVLDLREFLNSSNDRELHFSMVDGDFKKFEGKWSVKSKKRSSPTILSYEVNVIPMFNFPAIFLERIIRSDLPVNLRALACRAESNFEGLQKIALTASSKSGSTVLDITLEERDMSIRDLKKSYSNSSSGPLPQAPSELNSNWGVYGKVCRLDRPCLVDEIHLRRLDGLLENGGVHRCVAASITVKAPVREVWNVLTAYESLPEIVPNLAISKVLSRDNNKVRIVQEGCKGLLYMVLHARVVMDLCEQLEQEVSFEQVEGDFDSFCGRWQLEQLGNQHTLLKYSVESKMRQDTFLSEAITEEVIYEDLPSNLCAIRDYIEKRIGTNSSEVYDQENVERLSGETQQEQPSTSSSKGSDTDPITLTENKTSARASILIKQRPRVPGLQQDIEVLKSEILSFISEHGQEGFMPMRKQLRVHGRVDIEKAINRMGGFRKIASLMNLSLAYKHRKPKGYWDNLENLQEEITRFQKNWGMDPSYMPSRKAFERAGRYDIARALEKWGGLHEVSLLLSLKLRHPNRQASLSGDKKNDYASSPTAEA*

Click here to download the sequence:
Link to NCBI Protein BLAST