Transcript Information: R_Transcript_188005.p1


Annotated TAIR IDAT5G08720.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: Polyketide cyclase / dehydrase and lipid transport protein (TAIR:AT4G01650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:2841536-2845335 | Reverse length=719
E-Value1.2E-93
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.9556743880056
Replicate 22.1558701320306
Replicate 31.7384577639937
Condition 2: 8 Hour
Replicate 10.21862379417183
Replicate 20.19965073072487
Replicate 30.48620385590322
Condition 3: 24 Hour
Replicate 12.3572748492732
Replicate 21.9692195438015
Replicate 31.4656945102833


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_188005.p1 GENE.R_Transcript_188005~~R_Transcript_188005.p1 ORF type:5prime_partial len:224 (+),score=44.06 R_Transcript_188005:1-672(+)
GAGAAGAGGATAGGAACAGATTCCACAGATTCCTCCGAGGTGTATGATCATGAAAATGTGGAGCGGCAGAGTGGTGAAACACACCAAGGGCAGCCTAGCACTTCATCCAGTAAAGGAAGCGATACTGACCCCATTACACTCGCGGAAAATAAATCAAGTGCAAGGAATTCAAGTCTTATAAAACAAAGGCCTAGAGTTCCTGGTTTGCAACAGGATATTGAAGTTCTTAAATCTGAGATACTGTCATTTATTTCAGAGCATGGACAGGAAGGTTTTATGCCCATGAGGAAGCAACTTCGTGTTCATGGTAGGGTTGACATTGAGAAGGCGATCAATAGGATGGGTGGGTTTAGAAAAATTGCGTCCCTGATGAATCTCTCTCTGGCTTACAAACATCGAAAACCAAAGGGTTATTGGGATAACCTTGAAAATTTGCAGGAAGAAATTACTCGTTTTCAGAAGAACTGGGGGATGGATCCTTCATATATGCCCAGTAGAAAAGCCTTTGAACGTGCAGGACGTTATGACATTGCTCGTGCCCTGGAAAAATGGGGTGGCCTACACGAAGTTTCGCTTCTTTTGTCACTAAAACTGAGGCACCCAAACAGACAGGCAAGTCTATCTGGTGACAAGAAAAATGATTATGCTTCATCCCCAACTGCAGAGGCATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_188005.p1 GENE.R_Transcript_188005~~R_Transcript_188005.p1 ORF type:5prime_partial len:224 (+),score=44.06 R_Transcript_188005:1-672(+)
EKRIGTDSTDSSEVYDHENVERQSGETHQGQPSTSSSKGSDTDPITLAENKSSARNSSLIKQRPRVPGLQQDIEVLKSEILSFISEHGQEGFMPMRKQLRVHGRVDIEKAINRMGGFRKIASLMNLSLAYKHRKPKGYWDNLENLQEEITRFQKNWGMDPSYMPSRKAFERAGRYDIARALEKWGGLHEVSLLLSLKLRHPNRQASLSGDKKNDYASSPTAEA*

Click here to download the sequence:
Link to NCBI Protein BLAST