Transcript Information: R_Transcript_188006.p1


Annotated TAIR IDAT5G08720.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: Polyketide cyclase / dehydrase and lipid transport protein (TAIR:AT4G01650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:2841536-2845335 | Reverse length=719
E-Value2E-281
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.176209949892
Replicate 20.65711223359502
Replicate 30.78517878496499
Condition 2: 8 Hour
Replicate 10
Replicate 20.19994827279749
Replicate 30.48692845181366
Condition 3: 24 Hour
Replicate 11.1632868043844
Replicate 20.78886171888801
Replicate 31.435259323731


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_188006.p1 GENE.R_Transcript_188006~~R_Transcript_188006.p1 ORF type:5prime_partial len:671 (+),score=108.21,Polyketide_cyc|PF03364.16|1.3e-18,Polyketide_cyc|PF03364.16|2e-20,Polyketide_cyc2|PF10604.5|0.001,Polyketide_cyc2|PF10604.5|0.0002 R_Transcript_188006:3-2015(+)
CTTACTCTCACTCTGAACTTCACTTCATCAAATTACCCTTCTTTTTTTTTTTATTCAAAAAAAAAAAAAAAAACCTCAATGATCTCCTCCTCACTCATCTTCAACCCTAATTCCCACCTTCAAATTCTCAAACCCTTTTTTTTGGCGCAAAGCATTAATTACATTGCATCAAACCCTAGATTGTGCTTCAATGGCGGTGGCCAACAGGCGAGGGTAGTGAACGGGTATCGAAATTGCAATGGATTAGTAGAAAGTTCTAGAAGGGATGTGGTGGAGGATTTGGAGAGAGAAATTCGTGATCGAAAGGTTCATTGTGAGGTTGATGTGATTTCTTGGAGAGAGCGTCGTATTAAGGCCGAGATTTTGGTGAATTCTGATGTTGAATCTGTTTGGAATGCTCTCACTGATTATGAGCGTCTCGCTGATTTCGTCCCCAATCTCGTTTGCAGTGGAAGAATCCCATGTCCATATCCTGATAGAATATGGTTAGAGCAAAGAGGCTTGCAAAGGGCGCTGTATTGGCATATAGAGGCCCGTGTTGTCTTGGATCTCCGAGAATTCCTTAACTCTTCAAATGATCGTGAACTGCACTTCTCCATGGTGGACGGGGACTTTAAAAAATTTGAAGGAAAATGGTCCGTCAAATCAAAGAAAAGGTCCTCACCAACAATACTATCTTATGAGGTCAATGTCATACCAATGTTCAATTTTCCTGCGATTTTCCTGGAGAGGATTATTCGATCAGACCTTCCTGTGAATCTTCGAGCTTTGGCTTGCAGAGCTGAGAGCAATTTTGAAGGGCTCCAGAAGATAGCCTTGACAGCTTCTTCAAAATCTGGGAGCACAGTCTTAGACATTACGTTAGAGGAAAGAGATATGTCTATCAGAGATCTTAAGAAGAGTTACTCTAATTCTTCCTCTGGGCCCTTGCCCCAGGCACCTTCTGAGTTGAACAGTAACTGGGGAGTATATGGTAAAGTTTGTAGGCTTGACAGGCCCTGCTTGGTGGATGAAATTCACCTCCGTAGATTGGATGGCTTATTGGAAAATGGTGGTGTTCATCGCTGTGTTGCTGCTAGCATAACAGTGAAAGCTCCCGTTCGTGAAGTCTGGAATGTTTTGACTGCTTATGAAAGTCTTCCAGAGATAGTTCCAAATCTGGCAATCAGCAAAGTGTTATCCAGAGATAACAACAAAGTTCGCATCGTACAGGAAGGATGCAAGGGCCTGTTGTATATGGTACTTCATGCTCGGGTCGTCATGGACTTGTGCGAACAGCTTGAGCAAGAGGTTAGTTTTGAACAGGTTGAAGGGGACTTTGACTCCTTTTGTGGAAGGTGGCAGCTTGAGCAGCTGGGAAACCAACACACACTGCTAAAATACTCTGTGGAATCAAAAATGCGCCAGGATACCTTTCTGTCAGAAGCGATTACGGAAGAGGTTATATATGAGGATCTTCCATCCAACCTGTGTGCTATCCGGGACTACATTGAGAAGAGGATAGGAACAAATTCCTCTGAGGTGTATGATCAAGAAAATGTGGAGCGGCAGTGTGGTGAAATACACCAAGAGCAGCGTAGCACTTCATCCAGTAAAGAGCATGGACAGGAAGGTTTTATGCCCATGAGGAAGCAACTTCGTGTTCATGGTAGGGTTGACATTGAGAAGGCGATCAATAGGATGGGTGGGTTTAGAAAAATTGCGTCCCTGATGAATCTCTCTCTGGCTTACAAACATCGAAAACCAAAGGGTTATTGGGATAACCTTGAAAATTTGCAGGAAGAAATTACTCGTTTTCAGAAGAACTGGGGGATGGATCCTTCATATATGCCCAGTAGAAAAGCCTTTGAACGTGCAGGACGTTATGACATTGCTCGTGCCCTGGAAAAATGGGGTGGCCTACACGAAGTTTCGCTTCTTTTGTCACTAAAACTGAGGCACCCAAACAGACAGGCAAGTCTATCTGGTGACAAGAAAAATGATTATGCTTCATCCCCAACTGCAGAGGCATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_188006.p1 GENE.R_Transcript_188006~~R_Transcript_188006.p1 ORF type:5prime_partial len:671 (+),score=108.21,Polyketide_cyc|PF03364.16|1.3e-18,Polyketide_cyc|PF03364.16|2e-20,Polyketide_cyc2|PF10604.5|0.001,Polyketide_cyc2|PF10604.5|0.0002 R_Transcript_188006:3-2015(+)
LTLTLNFTSSNYPSFFFYSKKKKKTSMISSSLIFNPNSHLQILKPFFLAQSINYIASNPRLCFNGGGQQARVVNGYRNCNGLVESSRRDVVEDLEREIRDRKVHCEVDVISWRERRIKAEILVNSDVESVWNALTDYERLADFVPNLVCSGRIPCPYPDRIWLEQRGLQRALYWHIEARVVLDLREFLNSSNDRELHFSMVDGDFKKFEGKWSVKSKKRSSPTILSYEVNVIPMFNFPAIFLERIIRSDLPVNLRALACRAESNFEGLQKIALTASSKSGSTVLDITLEERDMSIRDLKKSYSNSSSGPLPQAPSELNSNWGVYGKVCRLDRPCLVDEIHLRRLDGLLENGGVHRCVAASITVKAPVREVWNVLTAYESLPEIVPNLAISKVLSRDNNKVRIVQEGCKGLLYMVLHARVVMDLCEQLEQEVSFEQVEGDFDSFCGRWQLEQLGNQHTLLKYSVESKMRQDTFLSEAITEEVIYEDLPSNLCAIRDYIEKRIGTNSSEVYDQENVERQCGEIHQEQRSTSSSKEHGQEGFMPMRKQLRVHGRVDIEKAINRMGGFRKIASLMNLSLAYKHRKPKGYWDNLENLQEEITRFQKNWGMDPSYMPSRKAFERAGRYDIARALEKWGGLHEVSLLLSLKLRHPNRQASLSGDKKNDYASSPTAEA*

Click here to download the sequence:
Link to NCBI Protein BLAST