Transcript Information: R_Transcript_188097.p1


Annotated TAIR IDAT5G61990.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:24900186-24903110 | Reverse length=974
E-Value6E-13
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.1921364311023
Replicate 20.66304106577783
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20.47075540718285
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20.23216061990081
Replicate 30.23039689144102


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_188097.p1 GENE.R_Transcript_188097~~R_Transcript_188097.p1 ORF type:5prime_partial len:95 (+),score=13.81,PPR_2|PF13041.2|4.6e-06,PPR_2|PF13041.2|2.1e-14,PPR_2|PF13041.2|3.1e-07,PPR_1|PF12854.3|2.1e+02,PPR_1|PF12854.3|1.5e-07,PPR_1|PF12854.3|0.011,PPR_1|PF12854.3|2.5e-07,PPR|PF01535.16|1.3e+02,PPR|PF01535.16|1e-05,PPR|PF01535.16|56,PPR|PF01535.16|0.00065,PPR_3|PF13812.2|2.2e+03,PPR_3|PF13812.2|4.2e-05,PPR_3|PF13812.2|8.5e+02,PPR_3|PF13812.2|13 R_Transcript_188097:3-287(+)
CTTGATGAGGCTGTAGCAATGTCTAAAGAGATGGAAACTAAAGGAGTGGTAAAGGATCTTGTGACCTACACTGTCTTAATTGATGCTATGTGTGAAAAAGGGAATTGGCAAAAGGCAGCACATATCTTCTCTAAGTTCATGGTTAAGGGACTGCAACCAAATCCTATCACTTATACTGTAATGATAAAAGGGGGACTGCAACCAAATCCTATCACTTATACTGTAATGATAAAAGGACTTTGCAAGAAAGGGCTCTGTACAGATGGTATTAGAGTGATCCCGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_188097.p1 GENE.R_Transcript_188097~~R_Transcript_188097.p1 ORF type:5prime_partial len:95 (+),score=13.81,PPR_2|PF13041.2|4.6e-06,PPR_2|PF13041.2|2.1e-14,PPR_2|PF13041.2|3.1e-07,PPR_1|PF12854.3|2.1e+02,PPR_1|PF12854.3|1.5e-07,PPR_1|PF12854.3|0.011,PPR_1|PF12854.3|2.5e-07,PPR|PF01535.16|1.3e+02,PPR|PF01535.16|1e-05,PPR|PF01535.16|56,PPR|PF01535.16|0.00065,PPR_3|PF13812.2|2.2e+03,PPR_3|PF13812.2|4.2e-05,PPR_3|PF13812.2|8.5e+02,PPR_3|PF13812.2|13 R_Transcript_188097:3-287(+)
LDEAVAMSKEMETKGVVKDLVTYTVLIDAMCEKGNWQKAAHIFSKFMVKGLQPNPITYTVMIKGGLQPNPITYTVMIKGLCKKGLCTDGIRVIP*

Click here to download the sequence:
Link to NCBI Protein BLAST