Transcript Information: R_Transcript_188473.p1


Annotated TAIR IDAT4G23800.1
Annotated Gene NameHMG (high mobility group) box protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:12390228-12392516 | Forward length=456
E-Value3E-11
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.40925921423136
Replicate 20.753230508208
Replicate 30.51360398197651
Condition 2: 8 Hour
Replicate 10.10980208496523
Replicate 20
Replicate 30.24419207112628
Condition 3: 24 Hour
Replicate 10.72064865737188
Replicate 20
Replicate 30.29445342628113


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_188473.p1 GENE.R_Transcript_188473~~R_Transcript_188473.p1 ORF type:5prime_partial len:223 (+),score=64.38,HMG_box|PF00505.15|1.1e+04,HMG_box|PF00505.15|1.6e+04,HMG_box|PF00505.15|1e-20,HMG_box|PF00505.15|1.6e+04,zf-PARP|PF00645.14|2.1e-14,zf-PARP|PF00645.14|1.5e+03,HMG_box_2|PF09011.6|6.3e+03,HMG_box_2|PF09011.6|5.2e+03,HMG_box_2|PF09011.6|2.6e-14 R_Transcript_188473:1-669(+)
GAAAAACCGTGTGTAGATGTTACACCACATAATCGTTCTAAATGTCAATCTAAAACTTGTAAAGAAACTCTCAAGAAAGGAGAACTTCGAGTTGGAAATGGTGCAAAAAAAAACTGGTGGCACATAAAGTGTGTACCAGAAAAACAAAAATCGAAAATTGAGAATTTAGAAGATTTGGAGGGTTATTCCGAACTCAACACTGCAGATCAAAAGAGACTTCAAAAAGAATGGGAGAATTCTGGCGGTGCTGCCTCTGATGATGATTCTGATTCAGGAAAAGTCAAAACTGGAAAAAGAAAGCGAAAGGATGATAAAGAGAAACCAAAAAAGAAAAGAAAGGAAAAGAAAGAAAAGAAGGATAATGGAGTTAAAAGAGCCCGATCTGCTTATATTTTCTTTTGCAATGAGAAGCGTAATGAAGTTACCAAAGAAAATCCCGAATTAAAAGCGAAAGAAGTTATGGCCGAGCTTGGTGCACGATGGTCCAAATTAAGTGCTGAGGATAAGAAACCTTATCTTGAAATGCAAAAAGAAGATAAACAAAGATATCAAGACGAAACAAATGTTCAAAAAAGCAATGAAAACTCAAAACATGAGGAAGAAGAAGCCGAGGAGGAAGTTGAAGAGGAAGTTGAAGAAGAGGAAGAAGAGGACGAAGAGGACGATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_188473.p1 GENE.R_Transcript_188473~~R_Transcript_188473.p1 ORF type:5prime_partial len:223 (+),score=64.38,HMG_box|PF00505.15|1.1e+04,HMG_box|PF00505.15|1.6e+04,HMG_box|PF00505.15|1e-20,HMG_box|PF00505.15|1.6e+04,zf-PARP|PF00645.14|2.1e-14,zf-PARP|PF00645.14|1.5e+03,HMG_box_2|PF09011.6|6.3e+03,HMG_box_2|PF09011.6|5.2e+03,HMG_box_2|PF09011.6|2.6e-14 R_Transcript_188473:1-669(+)
EKPCVDVTPHNRSKCQSKTCKETLKKGELRVGNGAKKNWWHIKCVPEKQKSKIENLEDLEGYSELNTADQKRLQKEWENSGGAASDDDSDSGKVKTGKRKRKDDKEKPKKKRKEKKEKKDNGVKRARSAYIFFCNEKRNEVTKENPELKAKEVMAELGARWSKLSAEDKKPYLEMQKEDKQRYQDETNVQKSNENSKHEEEEAEEEVEEEVEEEEEEDEEDD*

Click here to download the sequence:
Link to NCBI Protein BLAST