Transcript Information: R_Transcript_1887.p1


Annotated TAIR IDAT5G06860.1
Annotated Gene Namepolygalacturonase inhibiting protein 1
Annotated Gene Symbol(s)PGIP1, ATPGIP1
Annotation TypeHomolog
Chromosome Positionchr5:2132373-2133434 | Forward length=330
E-Value2E-56
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 120.714556197976
Replicate 216.455115847888
Replicate 311.599085958357
Condition 2: 8 Hour
Replicate 112.087169973958
Replicate 217.467660878483
Replicate 315.472746966488
Condition 3: 24 Hour
Replicate 113.552700449942
Replicate 216.83607548899
Replicate 328.459585483472


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_1887.p1 GENE.R_Transcript_1887~~R_Transcript_1887.p1 ORF type:complete len:393 (+),score=24.75,LRR_8|PF13855.2|3.4e+03,LRR_8|PF13855.2|0.038,LRR_8|PF13855.2|1.5e-10,LRR_8|PF13855.2|0.3,LRR_8|PF13855.2|1e+02,LRR_8|PF13855.2|4.7e+03,LRR_4|PF12799.3|4.7,LRR_4|PF12799.3|0.83,LRR_4|PF12799.3|0.013,LRR_4|PF12799.3|0.0029,LRR_4|PF12799.3|0.00032,LRR_4|PF12799.3|1.9e+02,LRR_1|PF00560.29|2.5e+03,LRR_1|PF00560.29|7,LRR_1|PF00560.29|65,LRR_1|PF00560.29|0.48,LRR_1|PF00560.29|0.048,LRR_1|PF00560.29|19,LRR_1|PF00560.29|2.5e+03,LRR_1|PF00560.29|1.2 R_Transcript_1887:103-1281(+)
ATGCATTCAAGCCTTAGGAAATCCTTATGCATCATACTCTTATTCTCATTGTTCAATCTATACTTTTGCACAGAACTTTGCAATCCCCATGACAAGAAATCTCTCCTCCAAATTAAACAACAGTTTGGCAATCCTGCGTTATTGTCCCTCTGGGATCCCAACCGAGACTGCTGCACCGAGTGGGAGAGCGACTTCAGCCAACGTGTGGTGTGCAACGACCACGGCCGTGTCACCCTCATCCTAATCGACGGTGCAGATGACGTTTTCGGAGCTCTAGACTTCATCGGGGAGTTCCCCTCTGCCTTTGGTGATCTACCCTTCCTTGAATTCATCTATGTTTTTAACCTCCCTAGAGTTTCTGGTTGTATTCCTTGTACCTTTTCCAAGCTTACTAATCTAAGGTCCTTGGTTATTTTGTCAACTAACCTTTCATGCCAAATCCCTAACTTGTTGGGCCGGCTTTCTAATCTGAGCCAGATCGACTTGAGCTTCAATAACCTCACCGGCCCAATACCAAAGACCTTGGGCCGGCTCACAAAACTCCGATCACTTACTGTTAGAAAGAACCAGTTGTCCGGCCCAATACCAGATGTCTTTGCTAAGATGTCAAGCCTAGAAAGTTTACACCTCAGCTATAACAATCTATGTGGCCCAATCCCACAATCATTGGGCCTTCTTCTTAATCTAAAGTACCTTTATCTTGAACACAACCAGTTAAGGGGTCCAATCCCAGAATCTCTGGGTCTCCTCAAAAATTTAACAAACGTGGTTATGTCCAATAACCAGCTAACTGGGCTGATCCCTAAATCATTGGGCCAATTTAGTGCAAATCAATTGGATCTTTCTTTCAATAACATAAGTGGGGATGCCTCATTTTTGTTTTCCAACAATACTGCTACTGGGTTTGGGTTCAGTTTTTTGCAGCTAAGCAACAATTTTCTCAAGTTTGACTTCTCCAATGTGGACCTACGGATGAATATAAATGGATTTAATATAAGCCACAATATGATTTATGGATCTCTTCCTACGGGGTTGGGAGAGCTGATTGCTCTATATGAGATTGATGTTAGCTATAACTGTCTTTGTGGCCCAATTCCCACTGGATTGCAGCAATTCAGCCCTAACGTCTTTGACCACAACAAGTGTCTGTGTGGTTCTCCTTTACCAGAGTGTAAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_1887.p1 GENE.R_Transcript_1887~~R_Transcript_1887.p1 ORF type:complete len:393 (+),score=24.75,LRR_8|PF13855.2|3.4e+03,LRR_8|PF13855.2|0.038,LRR_8|PF13855.2|1.5e-10,LRR_8|PF13855.2|0.3,LRR_8|PF13855.2|1e+02,LRR_8|PF13855.2|4.7e+03,LRR_4|PF12799.3|4.7,LRR_4|PF12799.3|0.83,LRR_4|PF12799.3|0.013,LRR_4|PF12799.3|0.0029,LRR_4|PF12799.3|0.00032,LRR_4|PF12799.3|1.9e+02,LRR_1|PF00560.29|2.5e+03,LRR_1|PF00560.29|7,LRR_1|PF00560.29|65,LRR_1|PF00560.29|0.48,LRR_1|PF00560.29|0.048,LRR_1|PF00560.29|19,LRR_1|PF00560.29|2.5e+03,LRR_1|PF00560.29|1.2 R_Transcript_1887:103-1281(+)
MHSSLRKSLCIILLFSLFNLYFCTELCNPHDKKSLLQIKQQFGNPALLSLWDPNRDCCTEWESDFSQRVVCNDHGRVTLILIDGADDVFGALDFIGEFPSAFGDLPFLEFIYVFNLPRVSGCIPCTFSKLTNLRSLVILSTNLSCQIPNLLGRLSNLSQIDLSFNNLTGPIPKTLGRLTKLRSLTVRKNQLSGPIPDVFAKMSSLESLHLSYNNLCGPIPQSLGLLLNLKYLYLEHNQLRGPIPESLGLLKNLTNVVMSNNQLTGLIPKSLGQFSANQLDLSFNNISGDASFLFSNNTATGFGFSFLQLSNNFLKFDFSNVDLRMNINGFNISHNMIYGSLPTGLGELIALYEIDVSYNCLCGPIPTGLQQFSPNVFDHNKCLCGSPLPECK*

Click here to download the sequence:
Link to NCBI Protein BLAST