Transcript Information: R_Transcript_188950.p1


Annotated TAIR IDAT3G01680.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:252033-255246 | Forward length=740
E-Value3E-34
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.11479849657056
Replicate 20.19807830581413
Replicate 30
Condition 2: 8 Hour
Replicate 11.0009944789754
Replicate 22.1798343933231
Replicate 32.5686241443944
Condition 3: 24 Hour
Replicate 11.2273041599716
Replicate 21.317767040632
Replicate 32.0648778006507


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_188950.p1 GENE.R_Transcript_188950~~R_Transcript_188950.p1 ORF type:complete len:318 (+),score=59.35,SEO_N|PF14576.2|5.4e-78 R_Transcript_188950:108-1061(+)
ATGGCAAATATTAACTCAAACCCTGCAAACTCAACACCAAATCTACAAGCTGGACCCTTGCTACATGTTGTAAGGAGTTCGATCAACATTAGTACTACTATTAATAAAAAAATGCTGAAAGTTTCCTACGATGACTTGAAAATCATCAAGGATATTCAATCAAGCCATGCTCATGACGCCCGTCAAGTCGACGTCAAACCTGTCCTTGATGTTGTTAAGGACATCCTCCATCGCTCCCAACATACCACCTTTCCTGATTTCATTGAGGCGGGACATGATGACATTGATGCTGTGAAAGTGTTGGAGGAGAAAATGGGAGGAGCAGCTGCAGGTGCTAATGGCACAATGCTCGAAGAATTAGCCATAGCCATACAGAAAGTTTGCTGTGAGTTTACATGCAAATGCACAGCTGGAGACGGGCACGCATCAGCAATGGCAATCCTGAACACTGTAGGAAGCTATTCATGGGATGCCAAAGTGGTGATAGCATTGGCAGCCTTTGCAGTGACTTATGGAGAGCTCTGGCTTGTCATTCACCAACACACCACCAACCCATTGGCTCGATCAATAGCTGTGCTTAAGCAAACACCTGAGAATAGTGAGATTAATGGGGTTCTCAAATCCATATTTGGTGACCTTAATGATCTTACTAAACTTTTGGTGGAAGTTTCCAAGACCCTAATTGCCTTCATGCTTTTGCCTTCTAAGTACATTACTCCTGAGGATCCACCCTTGTCTAATGCTATGAACCCGATTGCTAGTGCCTCTTATTGGGCTATTCGCGCTATTGTTACTTGTGGTGCTCAGATTGTTAACATCGGCATCACTTCTGGGGTGTATGGGTTAGCTACAGAGGCTTGGGACCTTTCAAGCTTGTCACATAAAGTCCAGAGCATACATGAAGAACTTGTGCAACGGCTCACTTTTGTTTTAGCAAAATTTGGACAATGCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_188950.p1 GENE.R_Transcript_188950~~R_Transcript_188950.p1 ORF type:complete len:318 (+),score=59.35,SEO_N|PF14576.2|5.4e-78 R_Transcript_188950:108-1061(+)
MANINSNPANSTPNLQAGPLLHVVRSSINISTTINKKMLKVSYDDLKIIKDIQSSHAHDARQVDVKPVLDVVKDILHRSQHTTFPDFIEAGHDDIDAVKVLEEKMGGAAAGANGTMLEELAIAIQKVCCEFTCKCTAGDGHASAMAILNTVGSYSWDAKVVIALAAFAVTYGELWLVIHQHTTNPLARSIAVLKQTPENSEINGVLKSIFGDLNDLTKLLVEVSKTLIAFMLLPSKYITPEDPPLSNAMNPIASASYWAIRAIVTCGAQIVNIGITSGVYGLATEAWDLSSLSHKVQSIHEELVQRLTFVLAKFGQC*

Click here to download the sequence:
Link to NCBI Protein BLAST