Transcript Information: R_Transcript_188953.p1


Annotated TAIR IDAT3G01680.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:252033-255246 | Forward length=740
E-Value1E-38
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.35328311525262
Replicate 20.40638000805738
Replicate 30.14778540384614
Condition 2: 8 Hour
Replicate 13.3174397670461
Replicate 20.79345064597755
Replicate 32.7520183843813
Condition 3: 24 Hour
Replicate 13.4066423628206
Replicate 20.64031396779095
Replicate 30.98847698585988


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_188953.p1 GENE.R_Transcript_188953~~R_Transcript_188953.p1 ORF type:complete len:310 (+),score=57.89,SEO_N|PF14576.2|8.2e-78 R_Transcript_188953:101-1030(+)
ATGGCAAATATTAACTCAAACCCTGCGAACTCAACACCAAATCTACAAAAGAGCTTCAGCAACATTAGTATTACTATTAATAACAAATTACCGAAAGTTTCCTACGATGACTTGAAAATCATCAAGGATATTCAATCAAGCCATGCTCATGACGCCCGTCAAGTCAACGTCAAACCTGTTCTTGATGTCGTTGAGGACATCCTCCTTCGTTCCCAGCATACCACCCTTGCTGATTTCATTGAGACGGGACATGATGACACTGATGCTGTGAATGTGTTGGAGGAAAAAATGGGAGGAGCAGCTGCAGTTGCTAAAGGCACAATGCTTGAAGAATTAGCCATAGCCATACAGAAAGTTTGCTGTGAGTTTACATGCAAATGCACAGCTGGAGACGGGCACGCATCAGCAATGGCAATCCTGAACACTGTAGGAAGCTATTCATGGGATGCCAAAGTGGTGATAGCATTGGCAGCCTTTGCAGTGACTTATGGAGAGCTCTGGCTTGTCATTCACCAACACACCACCAACCCATTGGCTCGATCAATAGCTGTGCTTAAGCAAACACCTGAGAATAGTGAGATTAATGGGGTTCTCAAATCCATATTTGGTGACCTTAATGATCTTACTAAACTTTTGGTGGAAGTTTCCAAGACCCTAATTGCCTTCATGCTTTTGCCTTCTAAGTACATTACTCCTGAGGATCCACCCTTGTCTAATGCTATGAACCCGATTGCTAGTGCCTCTTATTGGGCTATTCGCGCTATTGTTACTTGTGGTGCTCAGATTGTTAACATCGGCATCACTTCTGGGGTGTATGGGTTAGCTACAGAGGCTTGGGACCTTTCAAGCTTGTCACATAAAGTCCAGAGCATACATGAAGAACTTGTGCAACGGCTCACTTTTGTTTTAGCAAAATTTGGACAATGCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_188953.p1 GENE.R_Transcript_188953~~R_Transcript_188953.p1 ORF type:complete len:310 (+),score=57.89,SEO_N|PF14576.2|8.2e-78 R_Transcript_188953:101-1030(+)
MANINSNPANSTPNLQKSFSNISITINNKLPKVSYDDLKIIKDIQSSHAHDARQVNVKPVLDVVEDILLRSQHTTLADFIETGHDDTDAVNVLEEKMGGAAAVAKGTMLEELAIAIQKVCCEFTCKCTAGDGHASAMAILNTVGSYSWDAKVVIALAAFAVTYGELWLVIHQHTTNPLARSIAVLKQTPENSEINGVLKSIFGDLNDLTKLLVEVSKTLIAFMLLPSKYITPEDPPLSNAMNPIASASYWAIRAIVTCGAQIVNIGITSGVYGLATEAWDLSSLSHKVQSIHEELVQRLTFVLAKFGQC*

Click here to download the sequence:
Link to NCBI Protein BLAST